PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G160100.1

Common Name

B456_004G160100, LOC105791626

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 326aa MW: 35584.2 Da PI: 6.7819

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G160100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.5e-31	145	203	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver ++dp+++++tY+ eHnh+ Gorai.004G160100.1 145 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERHRSDPNMFIVTYTAEHNHP 203 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	34.578	139	205	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.3E-30	140	205	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	141	205	IPR003657	WRKY domain
SMART	SM00774	2.1E-37	144	204	IPR003657	WRKY domain
Pfam	PF03106	9.7E-26	146	203	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDVDWDLHAV VRGCATVTTT TTSSGGGCGG VAANSSLMAD FYPQSRFSSF GSQEEPFQGQ 60 FSCFLNQFEA KNAMEELHEL YKPFFPKSQP QRKQQQEHQQ VKPKLSQVGS VTTASSSTST 120 NNSRSKRRKN QLKRVCHVPP EGLSSDVWAW RKYGQKPIKG SPYPRGYYRC SSSKGCLARK 180 QVERHRSDPN MFIVTYTAEH NHPAPTHRNS LAGSTRQKPF TPQTVTAGDS VKPSSSKPAD 240 SLSPTTSVDE GVVVQSTQVH SREDLVEDEG EDEFGMSDTA VSDDFFEGLE GLAEIVTGNC 300 FPENFPASFD FSWTANNAAT AAGGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-22	129	206	2	80	Disease resistance protein RRS1
5w3x_D	7e-22	129	206	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ825868	0.0	KJ825868.1 Gossypium hirsutum WRKY protein 26 (WRKY26) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475240.1	0.0	PREDICTED: WRKY transcription factor 22-like
Swissprot	O04609	6e-93	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A0D2QYN1	0.0	A0A0D2QYN1_GOSRA; Uncharacterized protein
STRING	Gorai.004G160100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7810	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	5e-73	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G160100.1
Entrez Gene	105791626

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]