PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G164000.1
Common NameB456_004G164000, LOC105791667
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 282aa    MW: 31592.1 Da    PI: 5.0285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G164000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013167189123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Gorai.004G164000.1 167 YKCETCNKVFNSYQALGGHRASH 189
                         9***********99999998887 PP
2zf-C2H212.90.00034216238123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C k+Fs+   L  H r+H
  Gorai.004G164000.1 216 HECPVCFKVFSSGQALGGHKRSH 238
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.3E-9167238No hitNo description
PfamPF139124.4E-12167191IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783167194IPR007087Zinc finger, C2H2
SMARTSM003550.012167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
PfamPF139121.3E-11215238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743216243IPR007087Zinc finger, C2H2
SMARTSM003550.11216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MWPPVYPVKC KQLCLKSFAN GETQLRSNML NLPIPPNVEQ ESASPSYSSS SSEEKGQFYG  60
LRENPKRSIR FVDPEFVDAD SVVVQSKESE TESSKYPTQK RSRRTWDEPE QATSLSDTTT  120
EEDIAFCLMM LSRGQRKSKV AQHDDIDEEE EETDESAEFN RTTRGKYKCE TCNKVFNSYQ  180
ALGGHRASHK KIKTFETELA PENVGTTCSM TEKKTHECPV CFKVFSSGQA LGGHKRSHVA  240
AATAQTYVKS SNKLVVNFID LNLPAPVDDD DDDDDGFLML K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162711e-116JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475308.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2MZ790.0A0A0D2MZ79_GOSRA; Uncharacterized protein
STRINGGorai.004G164000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-44C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]