PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G174900.1

Common Name

B456_004G174900, LOC105791802

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 262aa MW: 31258 Da PI: 6.9667

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G174900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.4	2.1e-24	6	87	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e+++Li +r e+e+++ ++k +k+lWe vs++m++rg++r+p qCk+kw+nl +ryk ++++ ++ ++p+f++l+ Gorai.004G174900.1 6 QWGQEETRELIFIRGELERDFTAAKHNKTLWEIVSARMKDRGYTRTPDQCKSKWKNLLNRYKGKETSDPEN----GCQFPFFEELH 87 7************************************************************99999985....44689*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.258	1	63	IPR017877	Myb-like domain
SMART	SM00717	2.1E-4	3	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-5	4	65	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.81E-5	6	88	IPR009057	Homeodomain-like
Pfam	PF13837	8.4E-22	6	88	No hit	No description
CDD	cd12203	4.13E-22	6	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MLGSGQWGQE ETRELIFIRG ELERDFTAAK HNKTLWEIVS ARMKDRGYTR TPDQCKSKWK 60 NLLNRYKGKE TSDPENGCQF PFFEELHAVF TERAKTMQRR LLEPEAGSGS TQAKKKVKRT 120 ITERSSDEFS EGEDEDESEE EKPARGISHK RKKSDSTVLD KSPRPNSGTS TGLQEMLREF 180 FDQQLRMEMQ WREMMEKRAQ ERQLFEQEWQ HWMEKLERER LMVEKAWRER EEEMRRREES 240 RAERRDSLLT TLLNKLINDN N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	5e-15	7	85	7	86	DNA binding protein GT-1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF651784	0.0	EF651784.1 Gossypium hirsutum transcription factor TF2 (TF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475490.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A0D2S1D8	0.0	A0A0D2S1D8_GOSRA; Uncharacterized protein
STRING	Gorai.004G174900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17512	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-39	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G174900.1
Entrez Gene	105791802

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]