PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G181000.1

Common Name

B456_004G181000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BBR-BPC

Protein Properties

Length: 156aa MW: 17801.2 Da PI: 10.9133

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G181000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	61.7	3.2e-19	94	138	257	301
GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 grKmS+ a k + +L+aeG+dls+pvDLkdh +HGtn fvti+ Gorai.004G181000.1 94 GRKMSNRACIKFVLRLTAEGHDLSQPVDLKDHCDRHGTNNFVTIK 138 9*******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.1E-15	94	138	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MRKQKPSMKG SNQIVSKLLR PKQPENKPSG PKKAKGPIVL EARREKKNIL MEKKLLIFPG 60 CLCWAFQEWY KWGMLVVGNP RIAPLSGLVL AWHGRKMSNR ACIKFVLRLT AEGHDLSQPV 120 DLKDHCDRHG TNNFVTIKLI LYSMNYLHLA RHHSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475611.1	6e-71	PREDICTED: LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE7
TrEMBL	A0A0D2R6V3	1e-111	A0A0D2R6V3_GOSRA; Uncharacterized protein
STRING	Gorai.004G181000.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35826	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-21	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Gorai.004G181000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]