PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G185800.1

Common Name

B456_004G185800, LOC105791936

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 216aa MW: 23662.4 Da PI: 5.9013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G185800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Gorai.004G185800.1 65 YTCTFCRREFRSAQALGGHMNVH 87 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-6	62	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.9E-4	63	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-5	65	88	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.157	65	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	65	87	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MAADLRLLSL TQLQKLAQSQ HNQNLMAASW VWNPQEAADD DSWEVRAFAQ DTGNVMGTTW 60 PPRSYTCTFC RREFRSAQAL GGHMNVHRRD RARLHQTHPP APTVPLINQT SSSTTQDFVS 120 DGGLCLLYQI PTPNGAFNSP SMNPCSLDST SPLLSMSPYP SNNLMAPPPP PYINYPATPP 180 GLHNSSSADN NICSMETSIE ELDLELRLGQ RPTPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	60	87	2	29	superman protein
2l1o_A	2e-13	60	87	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615954	1e-170	JX615954.1 Gossypium hirsutum clone NBRI_GE60252 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475704.1	1e-158	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A0D2R776	1e-157	A0A0D2R776_GOSRA; Uncharacterized protein
STRING	Gorai.004G185800.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5284	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-42	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G185800.1
Entrez Gene	105791936

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]