PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G200600.1
Common NameB456_004G200600, LOC105792096
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 725aa    MW: 79706.1 Da    PI: 5.3803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G200600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.61.9e-923647233374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         elL ++Ae v +g+++ a+ +Larl+++ sp g+p+qR+a+y+ +AL+  +++   + ++  pp++ ++ +++ +l a+k+fsevsP+++f
  Gorai.004G200600.1 364 ELLHKAAELVGTGNFAHARGILARLNHQLSPVGKPFQRAAFYIRKALQLLITN---NSVSPPPPKSPTSFDVIFKLVAYKVFSEVSPFIQF 451
                         7999************************************************9...445566667777788******************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                          ++t Nqa+lea++ +er+Hi Dfdi+ G+QW++++q+L  R +g  slRiT+++sp +++  el  ++e L  fA+e+g++fe  vl  +
  Gorai.004G200600.1 452 VNFTSNQALLEALDDAERIHIMDFDIGCGAQWASFMQELPMRIRGVRSLRITAFASPLTHHPIELGLMRESLMLFANEIGLSFELVVLNFD 542
                         ***************************************************************************************9888 PP

                GRAS 185 rledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +l++   +l  +r++++Ea+aVn+ +   +  +++ +l++    +L++vk+lsPk+vv  +   d+n+ +F e ++ a++ y  +f+sl+a
  Gorai.004G200600.1 543 SLDQApySLPLFRTNQNEAVAVNFPV--WSSSNQPSALPN----LLRFVKQLSPKIVVSLDGGWDRNDLPFPELVTCAFQSYKNIFESLDA 627
                         8888744566679999********99..444455666666....*********************************************88 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         +   +s+  +k+Er+l+ ++i++ v  + ++     e++  W+  l ++GF+pv++s+++ +qa++++++ +++g++ve+++ slvl+W++
  Gorai.004G200600.1 628 G-NVTSDVVNKIERFLIVPRIESTVLGRLRA----PENMPLWKTLLCSSGFTPVTFSNFTKTQADCVVKRAQVRGFHVEKRQPSLVLCWQQ 713
                         8.6899********************99998....9******************************************************* PP

                GRAS 365 rpLvsvSaWr 374
                         r+L+s+SaWr
  Gorai.004G200600.1 714 RELISASAWR 723
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.155336703IPR005202Transcription factor GRAS
PfamPF035146.5E-90364723IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MQFQLQVNGA VELPGFGSIC QQDKWIKQQE GVANGFYYNN EQEPTSVLHM RRSQSPPTSA  60
STLASSFNGG AGGGNSTENT TNTEATIAPP NDKEEWATEL RQIPSEIDLV PEHEGTQRCN  120
IGLGDWETLL SESAVSPSQD HSLLRWIAGD ADDHSFGIKQ LLQSGSTGPN QGHDFEGNAG  180
SWVVDPCPGF DPIGSLATSG NVLSSAAPIL GGFPDSGFVP NPNNNENGKV GVATPSCSSV  240
EGVNNHEVLG ATVGLDINIQ DIMSTSPANN IGLPVTLPTL YQLQQQDLEK PQILMGQQRH  300
QQRPQNPNFS FPLPREQDLL EPLPKRLNAG NLEFSSQIPK LAGHELFTRK QLQQHMVAEE  360
EVLELLHKAA ELVGTGNFAH ARGILARLNH QLSPVGKPFQ RAAFYIRKAL QLLITNNSVS  420
PPPPKSPTSF DVIFKLVAYK VFSEVSPFIQ FVNFTSNQAL LEALDDAERI HIMDFDIGCG  480
AQWASFMQEL PMRIRGVRSL RITAFASPLT HHPIELGLMR ESLMLFANEI GLSFELVVLN  540
FDSLDQAPYS LPLFRTNQNE AVAVNFPVWS SSNQPSALPN LLRFVKQLSP KIVVSLDGGW  600
DRNDLPFPEL VTCAFQSYKN IFESLDAGNV TSDVVNKIER FLIVPRIEST VLGRLRAPEN  660
MPLWKTLLCS SGFTPVTFSN FTKTQADCVV KRAQVRGFHV EKRQPSLVLC WQQRELISAS  720
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3438572326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361120.0KP236112.1 Gossypium hirsutum LOM-like transcription factor (LOM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475951.10.0PREDICTED: scarecrow-like protein 21
SwissprotO813161e-104SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0D2R7W60.0A0A0D2R7W6_GOSRA; Uncharacterized protein
STRINGGorai.004G200600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16534813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-105GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]