PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G204600.1

Common Name

B456_004G204600, LOC105792140

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 256aa MW: 27571 Da PI: 8.4839

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G204600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.2	9e-26	144	188	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs+k +e+ Gorai.004G204600.1 144 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSTKLVEA 188 79****************************************997 PP
2	QLQ	46.7	9.5e-17	75	109	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k Gorai.004G204600.1 75 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 109 8888*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.1E-6	73	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.355	74	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-11	75	108	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.509	144	188	IPR014977	WRC domain
Pfam	PF08879	7.8E-22	145	187	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MNCAHTQEME PQDSSPLKTA NFSDLGIGLT NLGDSWNKES NRLSGGEGSP PIGLGLELGC 60 GSGHIPTGIT KSCGFTVFQL QELQLQSLIY KYMEAGLPVP HHLLLPIWKS VAGSLGGLHG 120 SPYQLYYGFL GCGPLQLGYK NGVDPEPGRC RRTDGKKWRC SKEAVPDHKY CERHMHRGRQ 180 RSTKLVEASQ ATRTSISRNN ANTNLSISLQ VDSSNNSGNG SNLSSSFTGF SPNIALLRGG 240 DSKAVPHSLQ FQELL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476011.1	0.0	PREDICTED: growth-regulating factor 10-like
TrEMBL	A0A0D2PFF5	0.0	A0A0D2PFF5_GOSRA; Uncharacterized protein
STRING	Gorai.004G204600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16724	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-35	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.004G204600.1
Entrez Gene	105792140

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]