PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G204600.2

Common Name

B456_004G204600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 255aa MW: 27465.9 Da PI: 8.4839

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G204600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.2	9e-26	143	187	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs+k +e+ Gorai.004G204600.2 143 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSTKLVEA 187 79****************************************997 PP
2	QLQ	46.7	9.5e-17	75	109	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k Gorai.004G204600.2 75 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 109 8888*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.1E-6	73	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.355	74	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-11	75	108	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.509	143	187	IPR014977	WRC domain
Pfam	PF08879	7.8E-22	144	186	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MNCAHTQEME PQDSSPLKTA NFSDLGIGLT NLGDSWNKES NRLSGGEGSP PIGLGLELGC 60 GSGHIPTGIT KSCGFTVFQL QELQLQSLIY KYMEAGLPVP HHLLLPIWKS VAGSLGGLHG 120 SPYQLYYVLG CGPLQLGYKN GVDPEPGRCR RTDGKKWRCS KEAVPDHKYC ERHMHRGRQR 180 STKLVEASQA TRTSISRNNA NTNLSISLQV DSSNNSGNGS NLSSSFTGFS PNIALLRGGD 240 SKAVPHSLQF QELL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476011.1	1e-166	PREDICTED: growth-regulating factor 10-like
TrEMBL	A0A0D2R131	0.0	A0A0D2R131_GOSRA; Uncharacterized protein
STRING	Gorai.004G204600.1	1e-165	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-35	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.004G204600.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]