PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G219300.1
Common NameB456_004G219300, LOC105792293
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 321aa    MW: 35919.8 Da    PI: 10.5801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G219300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31254311359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Gorai.004G219300.1 254 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHR 311
                         99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-18205250IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-33240311IPR003657WRKY domain
PROSITE profilePS5081129.493247310IPR003657WRKY domain
SuperFamilySSF1182905.62E-27250311IPR003657WRKY domain
SMARTSM007741.8E-37252312IPR003657WRKY domain
PfamPF031064.3E-27254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEVEEANKA AVESCHRVLS SLSQPKDQIQ YRNLMAETGE AVFRFKRVVS LLNTSLGHAR  60
VRKMRKLQTP FPQSILLDNP HRKATTDNPS KNLQLGPFYL GNNHQTAQPA SSGPYHMLQQ  120
QQQFRQRLQL HQQQMKHQAE MMFRKSNSGI SLNFDNSGCT PTMSSTRSFI SSLSIDGSVA  180
KLDGGGGSFH FTGGSRSLDQ GPRHKKKCSG RGEDGSVKCG SSGKCHCSKK RKHRVKRSIK  240
VPAISNKLAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLEEPSML  300
IVTYEGEHNH RRLPSQTTTT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20245314775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2206420.0KF220642.1 Gossypium hirsutum WRKY39-1 (WRKY39-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476258.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotQ9SR071e-101WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A0D2R8S10.0A0A0D2R8S1_GOSRA; Uncharacterized protein
STRINGGorai.004G219300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-83WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]