PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G220800.1
Common NameB456_004G220800, LOC105792307
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 217aa    MW: 24654.7 Da    PI: 5.2412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G220800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-1877126355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r+++g+f++aeeAa a+++a+ +++g
  Gorai.004G220800.1  77 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWIGTFDSAEEAALAYDQAAFAMKG 126
                         9*******.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.20776134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2976135IPR001471AP2/ERF domain
CDDcd000181.50E-2976134No hitNo description
SMARTSM003802.8E-3576140IPR001471AP2/ERF domain
PfamPF008471.9E-1376126IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2276136IPR016177DNA-binding domain
PRINTSPR003671.9E-107788IPR001471AP2/ERF domain
PRINTSPR003671.9E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDNLLSFFQY STTSEVSPES SFCSPEPYSS VFFNFNDAEE LLWMDLLAEG GRPKPEPEEV  60
TSEVKQPEPE PKGERNYRGV RKRPWGKYAA EIRDSTRNGV RVWIGTFDSA EEAALAYDQA  120
AFAMKGALAT LNFPMEVVKE SLEEMKYRCE EGCSPVVALK KRHYLRKRSL SSSTVKNKRS  180
KRNEVVGKQQ QQQQQRNLVV FEDLGADYLE QLLSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2775137466ATERF1
3gcc_A4e-2775137466ATERF1
5wx9_A6e-27771361574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164780.0JX616478.1 Gossypium hirsutum clone NBRI_GE61184 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476270.11e-160PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotA0A3Q7I5Y94e-64ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A0D2S4131e-159A0A0D2S413_GOSRA; Uncharacterized protein
STRINGGorai.004G220800.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-48ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]