 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.004G221600.1 |
| Common Name | B456_004G221600, LOC105793438 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
GRAS |
| Protein Properties |
Length: 445aa MW: 50461.4 Da PI: 5.6353 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.004G221600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 315.2 | 1.4e-96 | 77 | 432 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
lLl+cA a+s +dl++a+++L +++++asp++ + +R++ayf+ A+++r+ +s+ + ++ l et + a+++f ++sP++k
Gorai.004G221600.1 77 MLLLDCAVAISVDDLSEAHTMLLEIRQMASPHAvSCGERVIAYFAMAMSSRVINSWLGHCSPLIDYET-------VRGAFRAFDDASPFIK 160
68*******************************8889*****************88877765544333.......457899********** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
f+ +t N+a+lea+ ++rvHiiD+di+qGlQW aL+++La+R+egpp + iTg+g+ s + l etg++L+++A+++g+pf+f++ +a
Gorai.004G221600.1 161 FACFTSNRAMLEAFRWHDRVHIIDLDIMQGLQWSALFHTLATRTEGPPFVTITGLGR----SMKLLVETGNQLSNIARQFGIPFDFHP-IA 246
*********************************************************....9**************************.7* PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
k++ ++++e++++++gEa+a+++ h+l+d +++ ++ +Lk + +l P+v+++veq+++h ++sFl+rf+++l+yys++fds+ +
Gorai.004G221600.1 247 KKFGEIDIETIQLQRGEAVAIHWLQ--HSLYDATGPNQN----TLKHIEQLAPTVLTLVEQDLSH-HGSFLDRFVNSLHYYSSIFDSFGSY 330
************************9..99*999999999....**********************.899********************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
l++e+ +r+ +E+ ll rei+nv+a g +r+ + + ++Wr+ l + F+ +p+s++++++ +l+l+++ + gy++ ++g+ lgWk
Gorai.004G221600.1 331 LSAEDPNRHRIEHCLLYREIKNVLAIGGPARTRDDNFEHNWRSELARnRKFQLMPMSSNTMAETELMLNMFWpGYGYSLVGDDGTHRLGWK 421
************************************99****99976479*********************99****************** PP
GRAS 364 drpLvsvSaWr 374
+ L+++SaW+
Gorai.004G221600.1 422 ETCLFTASAWT 432
**********6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 445 aa
Download sequence Send
to blast |
MTNRGFEVVH ATLDMIQPHQ EPIWELPSFG LPSTSSDMER NELSEWVEQV TEPVINELRT 60
EKSMVWPVGD KVLSLMMLLL DCAVAISVDD LSEAHTMLLE IRQMASPHAV SCGERVIAYF 120
AMAMSSRVIN SWLGHCSPLI DYETVRGAFR AFDDASPFIK FACFTSNRAM LEAFRWHDRV 180
HIIDLDIMQG LQWSALFHTL ATRTEGPPFV TITGLGRSMK LLVETGNQLS NIARQFGIPF 240
DFHPIAKKFG EIDIETIQLQ RGEAVAIHWL QHSLYDATGP NQNTLKHIEQ LAPTVLTLVE 300
QDLSHHGSFL DRFVNSLHYY SSIFDSFGSY LSAEDPNRHR IEHCLLYREI KNVLAIGGPA 360
RTRDDNFEHN WRSELARNRK FQLMPMSSNT MAETELMLNM FWPGYGYSLV GDDGTHRLGW 420
KETCLFTASA WTMTTLRDGS GWSG*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the initial daughter cell before its asymmetric division and remains expressed in the endodermal cell layer after the division. {ECO:0000269|PubMed:17446396}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
