PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G233600.1
Common NameB456_004G233600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 476aa    MW: 53450.8 Da    PI: 4.4059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G233600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1611e-491184752374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +c +a+ s+++elaq+++ rl+e asp+g++++Rla+y+t  L ++ +           ++e+    s++  aa++++++++P+ +
  Gorai.004G233600.1 118 LHLLKACGDAMGSKQMELAQEIIRRLNEKASPTGKSIERLAFYLTLSLDKQANY---------LMQEA----SKNYDAAFNALYQIFPYGR 195
                         699***********************************************9998.........22222....3445567889********* PP

                GRAS  93 fshltaNqaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                         f+h+taN aIle++    +v Hi+Dfdi++G+QWpaL+++L    +g  +lR+T+++ +e++     +++ eet+++L k A+ +g+++e 
  Gorai.004G233600.1 196 FAHFTANLAILESIPAYATVlHIVDFDIGKGIQWPALIETLGR--QGLRTLRLTTIKWEEEDgscnATTSFEETKKQLCKHAKIVGLRMEV 284
                         **************9996666********************98..6999********999989999999*********************9 PP

                GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe.adh..nsesFlerflea 260
                         + +   ++e l ++  +vk  +E la n+++ l ++  ++ s++ + +e+L + k l     s  ++++ +   ++   +++sF   f   
  Gorai.004G233600.1 285 EEM---DIEGL-MS--KVKMdNEWLAFNCMVGLPHME-KQRSVK-QVEEFLATAKALlrsdtSKGIITLGDGIgIKKwtDDTSFDSFFEAQ 367
                         986...44444.33..344359**************6.444444.489****999875444355688888864333344778888888889 PP

                GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yr 350
                         l y+ al++s+e+   +  e+ri +E  ++ ++++++v +++ +  e +    +    l++ G++p ++s +++ +a+ l+r+ ++    +
  Gorai.004G233600.1 368 LVYFQALLESMEQF--QFLEARIAMECLFVVPHLCSLVNAQQWK--ETCS---T-GCSLTKLGLEPRRMSWENYLEAEELVRQAEGSCwVK 450
                         ***********999..556*********************9998..3333...3.46799*************************443144 PP

                GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374
                          e ++++++vlg ++ pLv vS+W+
  Gorai.004G233600.1 451 TEgQNNNEMVLGYMGAPLVRVSSWT 475
                         446779******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.43891453IPR005202Transcription factor GRAS
PfamPF035143.6E-47118475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDALVNSFKF STSSVSIEDF SDISSSTPYG DEAYSSHFLS THLPGILQWV NEGDTPNDQF  60
SLDGVENYCS EQMFMEDVSC QNLSPTSGEV SMDVIPLVQA YLVLPDESME IDNQTSILHL  120
LKACGDAMGS KQMELAQEII RRLNEKASPT GKSIERLAFY LTLSLDKQAN YLMQEASKNY  180
DAAFNALYQI FPYGRFAHFT ANLAILESIP AYATVLHIVD FDIGKGIQWP ALIETLGRQG  240
LRTLRLTTIK WEEEDGSCNA TTSFEETKKQ LCKHAKIVGL RMEVEEMDIE GLMSKVKMDN  300
EWLAFNCMVG LPHMEKQRSV KQVEEFLATA KALLRSDTSK GIITLGDGIG IKKWTDDTSF  360
DSFFEAQLVY FQALLESMEQ FQFLEARIAM ECLFVVPHLC SLVNAQQWKE TCSTGCSLTK  420
LGLEPRRMSW ENYLEAEELV RQAEGSCWVK TEGQNNNEMV LGYMGAPLVR VSSWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-161173794270GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478004.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A0D2S4P00.0A0A0D2S4P0_GOSRA; Uncharacterized protein
STRINGGorai.004G233600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1927257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.15e-21RGA-like protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]