PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G243100.2

Common Name

B456_004G243100, LOC105792544

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 307aa MW: 34599.9 Da PI: 9.5675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G243100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	122	173	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.004G243100.2 122 QRMTHIAVERNRRKQMNDYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 173 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.44E-12	120	177	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-13	120	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.364	121	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-17	121	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-11	122	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	127	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MALEAVIFQQ DLLGYNSNWS HDFGLGKPES KDSFGCFPDN QTPEINHFVH GDYWVSTTPT 60 SSMAAPVPYH HQLQHHCPNS SSDAANVNGL SSSGDPFDAS TTPRPKRRRF KARKNKQEIE 120 NQRMTHIAVE RNRRKQMNDY LSVLRSLMPE SYVQRGDQAS IIGGAINFVK ELEHRLQCLS 180 AEKEVKERSN LTNGGRRSCS SVFDEFFTFP QYSASSKQGD RKDSISMNDQ STVETQSAIA 240 DIEVTMVERH VNLRIRSKKR PAQLLKVVSG LNCMRLSILH LNVTTLDQTV LYSLSVKVQN 300 AGRRRL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	133	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476618.1	0.0	PREDICTED: transcription factor bHLH94-like isoform X2
Swissprot	Q9C7T4	1e-64	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0D2S5B9	0.0	A0A0D2S5B9_GOSRA; Uncharacterized protein
STRING	Gorai.004G243100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G243100.2
Entrez Gene	105792544

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]