PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G257000.1
Common NameB456_004G257000, LOC105792678
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 505aa    MW: 55583.8 Da    PI: 5.62
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G257000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.2e-35251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws+ +nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Gorai.004G257000.1  25 FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 106
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Gorai.004G257000.1 107 LLKTISRRKP 116
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3815109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3420114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDSLHDSISA ANAAAAANGN TVPPFLSKTY DVVNDPSTDS VVSWSSGNNS FVVWKVPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPPNVQ  120
SNQQPQVQNS SVGACIEVGK FGIEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQTVGQ  180
RVQVMEQRQQ QMMSFLAKAM QSPSFLGQLV QQQNESNRRI TGANKKRRLP RQDEENLAGE  240
NGAVSAKGQI VKFQPSLNEA AKAMLHQIMK MNTSPSLDPS INNSGSFLID GVPPSNAPDS  300
RSSSSRISGV TLSEVQPASA QSYLQAESGF PDTCLSAAAH LTSEHTNVDQ ISRINEHKSQ  360
KHGVIPNVSQ MQGTMPDSTV GLTDRSLAGS ERGNAEYLDP LLDVLDGTMP VETDNFSADH  420
DMDILLNGSP ELPAINDVFW EKFLATSPLT GDTDEISSSS LENGANLEQQ QAPVRQENGW  480
DGIHHMNHLT EQMGLLSSNG QIRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-271511419129Heat shock factor protein 1
5d5v_B2e-271511419129Heat shock factor protein 1
5d5v_D2e-271511419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024520.0KJ702452.1 Gossypium hirsutum heat shock transcription factor (HSF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476820.10.0PREDICTED: heat stress transcription factor A-1e-like isoform X1
SwissprotO818211e-164HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0D2RAS70.0A0A0D2RAS7_GOSRA; Uncharacterized protein
STRINGGorai.004G257000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-140heat shock transcription factor A1E
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  4. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]