PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G263900.2
Common NameB456_004G263900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 337aa    MW: 37350 Da    PI: 6.6762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G263900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.3e-152776355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gorai.004G263900.2 27 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                        9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-182586IPR016177DNA-binding domain
CDDcd000183.47E-252586No hitNo description
Gene3DG3DSA:3.30.730.101.5E-182685IPR001471AP2/ERF domain
SMARTSM003807.1E-332690IPR001471AP2/ERF domain
PROSITE profilePS5103219.2032684IPR001471AP2/ERF domain
PfamPF008477.3E-102776IPR001471AP2/ERF domain
PRINTSPR003679.5E-52738IPR001471AP2/ERF domain
PRINTSPR003679.5E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKHMTRQEYV ASLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSILESSQLP IGGAAKRLKD VEQAEMAMDM  120
VHRSDGDNIN THLPDGINTY GTSGWPTIAY QQAQPFSMHY PYGQRIWCKQ EQDSDPDHAF  180
HDLHQLQLGS THNFFQPSVL HNLMAMESSS MEHSSGSNTN SVIYNNTVSD GAGYGGYAIP  240
LGTVIPTDTN QNQSNDFGDN SNNEVKALGY ENVYTSSTDP YHSRNMYYLS QQSSSSTSQA  300
SPCNNWVPTA VPTIAQRSSN MAVCHGTPTF TVWNDT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476927.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D2R4L00.0A0A0D2R4L0_GOSRA; Uncharacterized protein
TrEMBLA0A0D2S6H30.0A0A0D2S6H3_GOSRA; Uncharacterized protein
STRINGGorai.004G263900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.19e-70AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]