PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G270400.2

Common Name

B456_004G270400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 262aa MW: 30294.7 Da PI: 5.6361

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G270400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.1	7.7e-32	18	102	3	88
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPtdeel+ +yL++kv++k+l++ e ik++diyk++P+dLpk+ +e+e+yfF++r +ky+++ r+nr+t sg+Wkatgk Gorai.004G270400.2 18 PGFRFHPTDEELIGFYLRRKVDNKSLRI-ELIKQIDIYKYDPSDLPKTSMMGENELYFFCRRGRKYRNSVRPNRVTGSGFWKATGK 102 9*************************.89***********87777899*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-43	9	136	IPR003441	NAC domain
PROSITE profile	PS51005	28.923	16	171	IPR003441	NAC domain
Pfam	PF02365	2.2E-16	18	115	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNMVHGTTTT VDEDVPLPGF RFHPTDEELI GFYLRRKVDN KSLRIELIKQ IDIYKYDPSD 60 LPKTSMMGEN ELYFFCRRGR KYRNSVRPNR VTGSGFWKAT GKGTKTDWMM HEFRLPNPTL 120 TAQDAEVWTI CRIFKRHKKN KQEWRQGAAK RASTSNGNGV HGYERCSVES SSHENYITFG 180 SQSIENYDDN DDDDGVDGEM VMDHMKNDGS CRREWYHEEM QCMVSSSSPS SSFSTENDFF 240 TNANWDELKS VVELDLDPFL L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-37	6	137	1	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-37	6	137	1	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-37	6	137	1	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-37	6	137	1	166	NO APICAL MERISTEM PROTEIN
4dul_A	8e-37	6	137	1	166	NAC domain-containing protein 19
4dul_B	8e-37	6	137	1	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847240	0.0	KC847240.1 Gossypium hirsutum NAC domain protein NAC63 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314214.1	1e-175	transcription factor JUNGBRUNNEN 1-like
Refseq	XP_012477038.1	1e-175	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_012477039.1	1e-175	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_012477040.1	1e-175	PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A0D2PJ58	0.0	A0A0D2PJ58_GOSRA; Uncharacterized protein
STRING	Gorai.004G270400.1	1e-175	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-66	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.004G270400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]