PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G001300.1
Common NameB456_005G001300, LOC105796249
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 757aa    MW: 82816.3 Da    PI: 6.343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G001300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.51.4e-1283877432374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++++lpp ++s++++++ ++a+++f+ +sP++k
  Gorai.005G001300.1 387 LTLLLQCAEAVSANKFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLLSSCLGICATLPPIPQSQSHTQKIVSAFQVFNGISPFVK 477
                         579**************************************************************************************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++fA++lg+pf+f + va
  Gorai.005G001300.1 478 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGLPFQFCP-VA 563
                         *********************************************************....9**************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +le+e+L+v++ Ea+aV++    h+l+d ++s ++     L+l+++l Pkvv+vveq++ +++++Fl rf+ea++yysa+fdsl a+
  Gorai.005G001300.1 564 DKVGNLEPERLKVSKTEAVAVHWLQ--HSLYDVTGSDTN----ALWLLRRLAPKVVTVVEQDLRRQEGPFLGRFVEAIHYYSAVFDSLGAS 648
                         ************************9..999999999999....************************************************ PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll++ei+nv+a  g +      ++++Wre+l+++GFk ++l  +aa+qa lll +++s+gy++ e++gsl lgWkd 
  Gorai.005G001300.1 649 YGEESEERHVVEQQLLSKEIRNVLALGGGS-----MKFHNWREKLQQCGFKGISLAGNAATQATLLLGMFPSHGYTLVEDNGSLKLGWKDL 734
                         ****************************98.....78****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Gorai.005G001300.1 735 CLLTASAWR 743
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.152360723IPR005202Transcription factor GRAS
PfamPF035144.8E-126387743IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDASDLVDEN HSETNGSSSS RGHPVAVANN TSDGKMMRKR MASEIADNQR FPRRTLVSEP  60
EPDNNTVCSF LPAPASSNPL LNHSNIKMNT AIFPSANFIA VTSGGPAVLS TTTSTFTCID  120
TISTSKPHPP AVCGFSGLPL FPPTDRNRNS VTATTASDSV IISPISNSMD DTSATVWIDG  180
VIRDLIHTSS NVSISQIIHN VREIIYPCNP NLATLLEYRL RSLVDPVERR SKEGEASLLQ  240
RNHSQQQGSS GLTFNLDPAL DSLPNCSLPE SCSMSQYLNW EINPLSVSNS AVATQHQHHN  300
QISSSPSATT PPVLSLYQTL PHHQQTREQQ PLPVPEENPS PVEKTTPSTT ACTTPTSTFQ  360
IVQACSARDR KEEIRQQKRD EEGLHLLTLL LQCAEAVSAN KFEEANRMLL ELSQLSTPFG  420
TSAQRVAAYF SEAMSARLLS SCLGICATLP PIPQSQSHTQ KIVSAFQVFN GISPFVKFSH  480
FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPHVRLT GLGTSLEALE  540
ATGKRLSDFA DKLGLPFQFC PVADKVGNLE PERLKVSKTE AVAVHWLQHS LYDVTGSDTN  600
ALWLLRRLAP KVVTVVEQDL RRQEGPFLGR FVEAIHYYSA VFDSLGASYG EESEERHVVE  660
QQLLSKEIRN VLALGGGSMK FHNWREKLQQ CGFKGISLAG NAATQATLLL GMFPSHGYTL  720
VEDNGSLKLG WKDLCLLTAS AWRPGEDTLP FQFHAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03707443380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481282.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0D2R6S00.0A0A0D2R6S0_GOSRA; Uncharacterized protein
STRINGGorai.005G001300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]