PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G013700.1

Common Name

B456_005G013700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 386aa MW: 44624.9 Da PI: 5.1119

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G013700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	81.4	1.5e-25	13	354	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 + Ll+ A+a+++g+l++a+a+L+ + l +pd+ + R+++yf+eAL +r ++ l+p +++ +++ ++ P+ Gorai.005G013700.1 13 KWLLDSAQAIEDGNLKRADAFLQLILILadETPDKfRVQSRVVKYFAEALVRRAYG--------LHPASSN----------FTFPVNPAPY 85 56999***************999888455666667889************........4444443..........2223455677 PP GRAS 91 lkfshl...taNqaIleavegeervHiiDfdisqGlQWp.aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 l+ + + + I +a+ g++r+H iDf+i + + l +L + +++p +R+ + +p + k l++ e L++ A+e++v++e Gorai.005G013700.1 86 LRSRNSidgVIKKVIDDALMGNRRLHLIDFSIPRNYCFEdSVLCTLPNFSGDPLPVRVSYILPPF-QAKYVLSSQMEFLTRDAREVNVKLE 175 76665512246799***************877777438999999999999******954.478889999999********8 PP GRAS 178 fnv..lvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 ++ ++a++l+++ e+++k+ +E+++V ++l++l+++ ++e L +k+++P++v++ + ++h++++Fl+ f ++++y Gorai.005G013700.1 176 DEPkvVYANSLAEVGECEIDFKRsrdDEMVVVYYKFKLEKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSFQY 262 76521688899999999999999999************99888888....8999***************************** PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 + +d+++++ + +v++ ++e++ v eg++ + +tl++W++ +++aGF+ +pl++++ + + + ee Gorai.005G013700.1 263 SLKTLDCWAES-------EFVVDEY--KWELSRDVG-EGNNVIRGYQTLSEWQRLFSMAGFTRIPLNHNEDNLGDE---------KIMREE 334 ****777.......5777777..788888876.5555689999***************9998753332.........245688 PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +++l+lg k+ p++++SaW+ Gorai.005G013700.1 335 EECLILGNKRCPMFFLSAWK 354 99***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.397	1	343	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-23	13	354	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MASSFVDTDT VLKWLLDSAQ AIEDGNLKRA DAFLQLILIL ADETPDKFRV QSRVVKYFAE 60 ALVRRAYGLH PASSNFTFPV NPAPYLRSRN SIDGVIKKVI DDALMGNRRL HLIDFSIPRN 120 YCFEDSVLCT LPNFSGDPLP VRVSYILPPF QAKYVLSSQM EFLTRDAREV NVKLEDEPKV 180 VYANSLAEVG ECEIDFKRSR DDEMVVVYYK FKLEKLVRDA KAMERELVRL KEINPTIVIM 240 LDFYSNHTHS NFLTCFKDSF QYSLKTLDCW AESEFVVDEY KWELSRDVGE GNNVIRGYQT 300 LSEWQRLFSM AGFTRIPLNH NEDNLGDEKI MREEEECLIL GNKRCPMFFL SAWKPKVEDG 360 HFNSFSTDHK FGQGTFLFIF SNYID*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MASSFVDTDT VLKWLLDSAQ AIEDGNLKRA DAFLQLILIL ADETPDKFRV QSRVVKYFAE  60
ALVRRAYGLH PASSNFTFPV NPAPYLRSRN SIDGVIKKVI DDALMGNRRL HLIDFSIPRN  120
YCFEDSVLCT LPNFSGDPLP VRVSYILPPF QAKYVLSSQM EFLTRDAREV NVKLEDEPKV  180
VYANSLAEVG ECEIDFKRSR DDEMVVVYYK FKLEKLVRDA KAMERELVRL KEINPTIVIM  240
LDFYSNHTHS NFLTCFKDSF QYSLKTLDCW AESEFVVDEY KWELSRDVGE GNNVIRGYQT  300
LSEWQRLFSM AGFTRIPLNH NEDNLGDEKI MREEEECLIL GNKRCPMFFL SAWKPKVEDG  360
HFNSFSTDHK FGQGTFLFIF SNYID*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481503.1	0.0	PREDICTED: DELLA protein RGA1-like
TrEMBL	A0A0D2S9H1	0.0	A0A0D2S9H1_GOSRA; Uncharacterized protein
STRING	Gorai.005G013700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	3e-25	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G013700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]