PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G014000.1

Common Name

B456_005G014000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 416aa MW: 48704.7 Da PI: 4.9813

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G014000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	98.2	1.3e-30	15	380	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lLl+cAea+++gdl+ a+a+L+++ la ++ R+++yf+ AL +r ++ l+p ++ ++++ ++ sP++ Gorai.005G014000.1 15 RLLLSCAEAIEDGDLKSADAYLQNILILADERPyLYKSRVVKYFADALVRRAYG--------LHPASS----------YFTFPVDPSPYYH 87 79************************9998867899************........222211..........2222234444444 PP GRAS 93 fshltaNqaI........le..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 + + N I +e a+ g++++H iDf+i + + ++L + +++p +R+ + +p ++ + + e L++ A+e++ Gorai.005G014000.1 88 CGSYLINGVIenvihdalMEknALMGNRKLHLIDFSIPYSSFQNSVVRTLPTFSGDPLPVRVSYILPPFLKKYVKFLRQMEFLTRDAKEVN 178 44444444431111000032225667799**********************************887755555555578***** PP GRAS 174 vpfe..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 v++e ++++ ++l++++ e+++k+ +E+++V ++l +l+++ ++e L +k+++P++v++ + ++h++++Fl+ f + Gorai.005G014000.1 179 VKLEdeLKLVYGNSLAEVDECEIDLKRrrdDEMVVVYYKFKLDKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKD 265 7336778999*******9999999************99888888....8999************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg 348 +++y + +d++e+ + ++e ++ + + a eg++ + rh tl +W++ +++aGF+ +pl++++ ++l+++ v+ +d Gorai.005G014000.1 266 SFQYSLKTLDCWEEL-------DLYFDEE--YEWECHIEAWEGNNVIRRHPTLTEWQHLFSMAGFSRIPLNHRE--GIDLIVKDVNplNDF 345 ********887.......3333333..23335666889999999******************8764..455555555553333 PP GRAS 349 yrve.........eesgslvlgWkdrpLvsvSaWr 374 +++ +e+++l+lg k+ p++++SaW+ Gorai.005G014000.1 346 FSMSnqswleimgKEEECLILGYKEFPMFFLSAWK 380 444433333366677*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.743	1	351	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-28	15	380	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MASSLFDIDT DTALRLLLSC AEAIEDGDLK SADAYLQNIL ILADERPYLY KSRVVKYFAD 60 ALVRRAYGLH PASSYFTFPV DPSPYYHCGS YLINGVIENV IHDALMEKNA LMGNRKLHLI 120 DFSIPYSSFQ NSVVRTLPTF SGDPLPVRVS YILPPFLKKY VKFLRQMEFL TRDAKEVNVK 180 LEDELKLVYG NSLAEVDECE IDLKRRRDDE MVVVYYKFKL DKLVRDAKAM ERELVRLKEI 240 NPTIVIMLDF YSNHTHSNFL TCFKDSFQYS LKTLDCWEEL DLYFDEEYEW ECHIEAWEGN 300 NVIRRHPTLT EWQHLFSMAG FSRIPLNHRE GIDLIVKDVN PLNDFFSMSN QSWLEIMGKE 360 EECLILGYKE FPMFFLSAWK PKVEEEHLNF NSSNDKFGQG FNPYPSPLRP LRPFPE

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MASSLFDIDT DTALRLLLSC AEAIEDGDLK SADAYLQNIL ILADERPYLY KSRVVKYFAD  60
ALVRRAYGLH PASSYFTFPV DPSPYYHCGS YLINGVIENV IHDALMEKNA LMGNRKLHLI  120
DFSIPYSSFQ NSVVRTLPTF SGDPLPVRVS YILPPFLKKY VKFLRQMEFL TRDAKEVNVK  180
LEDELKLVYG NSLAEVDECE IDLKRRRDDE MVVVYYKFKL DKLVRDAKAM ERELVRLKEI  240
NPTIVIMLDF YSNHTHSNFL TCFKDSFQYS LKTLDCWEEL DLYFDEEYEW ECHIEAWEGN  300
NVIRRHPTLT EWQHLFSMAG FSRIPLNHRE GIDLIVKDVN PLNDFFSMSN QSWLEIMGKE  360
EECLILGYKE FPMFFLSAWK PKVEEEHLNF NSSNDKFGQG FNPYPSPLRP LRPFPE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	1e-42	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728589.1	0.0	PREDICTED: uncharacterized protein LOC107939729 isoform X4
Refseq	XP_016728590.1	0.0	PREDICTED: uncharacterized protein LOC107939729 isoform X4
TrEMBL	A0A0D2PLA9	0.0	A0A0D2PLA9_GOSRA; Uncharacterized protein (Fragment)
TrEMBL	A0A1U8MP62	0.0	A0A1U8MP62_GOSHI; uncharacterized protein LOC107939729 isoform X4
STRING	Gorai.005G014000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	4e-30	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G014000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]