PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G014600.1

Common Name

B456_005G014600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 1308aa MW: 151224 Da PI: 6.2122

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G014600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	161.2	8.6e-50	15	370	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 elL++cA+a+++g+l+ a+++L ++ +la ++ + +l+ yf+eAL +r ++ ++ y + +n ++ + ++ +++ + Gorai.005G014600.1 15 ELLVSCAHAIEDGNLKTADSFLHQIWNLAPEEHGLISKLVRYFAEALVRRAYGLHPSYY--------TYSNlQIPHPLYYYYYY-----SR 92 79*************************************************444444........32221333334444444.....44 PP GRAS 93 fs.hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181 f + + +aI a+ g++ H iDf i + L+++L +R+++p s+RiT+v + +++ +e e L+ + + l+++++ + l Gorai.005G014600.1 93 FDiNEMVGEAIESAAIGKKGFHLIDFHIPHLYGRGYLFKTLPNRSSDPLSVRITVVLPTFLKNTVDFQEEMEYLTGVGKPLKIELKREDLr 183 431556789999999999*******9999999******************777799*****************876555 PP GRAS 182 ..vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +a++l +++ ++L++++ +Eal+V ++ h+ll+e ++++ L +++++P++v++ eq a+ n+++F +r+ +++yys + Gorai.005G014600.1 184 ivYANSLGEVDESTLDLRRtndDEALVVYYNFKFHTLLAEAEAMKK----ELIKLRQINPEIVIMQEQYANDNDGNFIKRLEYSFRYYSNF 270 54999******9999999************99999999....78889******************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 f +++ + + + + + + r+i n+vaceg++r++rh++l +Wr+ l +aGF ++p+++++ + l + + ++ +++ee+g+l Gorai.005G014600.1 271 FQYYSNLFKSGKPLDYNTAKY-YMRQIHNIVACEGRDRIMRHQSLDEWRDLLLTAGFLQIPFQKDV----ENLHALYWVE--EIKEEKGCL 354 ***99999999998888.679********************************98765....5666666666..89*** PP GRAS 359 vlgWkdrpLvsvSaWr 374 vl kd +++vS+Wr Gorai.005G014600.1 355 VLSHKDCLILFVSCWR 370 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.577	1	356	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-47	15	370	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	10.297	698	753	IPR003656	Zinc finger, BED-type
SMART	SM00614	9.1E-13	698	748	IPR003656	Zinc finger, BED-type
Pfam	PF02892	1.6E-8	701	745	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	3.33E-7	701	751	No hit	No description
SuperFamily	SSF53098	1.29E-41	850	1289	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	9.6E-19	1063	1157	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	2.5E-16	1208	1288	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1308 aa Download sequence Send to blast
MASSSSFSSA DAALELLVSC AHAIEDGNLK TADSFLHQIW NLAPEEHGLI SKLVRYFAEA 60 LVRRAYGLHP SYYTYSNLQI PHPLYYYYYY SRFDINEMVG EAIESAAIGK KGFHLIDFHI 120 PHLYGRGYLF KTLPNRSSDP LSVRITVVLP TFLKNTVDFQ EEMEYLTGVG KPLKIELKRE 180 DLRIVYANSL GEVDESTLDL RRTNDDEALV VYYNFKFHTL LAEAEAMKKE LIKLRQINPE 240 IVIMQEQYAN DNDGNFIKRL EYSFRYYSNF FQYYSNLFKS GKPLDYNTAK YYMRQIHNIV 300 ACEGRDRIMR HQSLDEWRDL LLTAGFLQIP FQKDVENLHA LYWVEEIKEE KGCLVLSHKD 360 CLILFVSCWR PRAGEEHFKF NLNSNKLRQG FNPRPFQPFP EGFILNRLAT FAEIYDMLED 420 VCFRYELPVA FTWACEANTD KIMLDGKKYT LFMERTSCYA SNEGSQCFME ACAKHHIQEG 480 QAIAGKALQS SANFHFEPSI TKLIKSDYPL FNAAQLFGSH AVVAICLQNH YIIGDVYVVE 540 FYWPEIESEK SEFLALDIFN DLKNMKKKFV TIRVGSNEVG FEREAISTTL QGTMHTRNAQ 600 PASSTNDLLS SNTTWSLNAV QPCDVHEMER HGLVEQVESA PFSTPNPMSY GGVLQTQGPH 660 KQEIGEKDFI SQTVSIGDYE IVKAYMETCK VPRTKRRKYL SKVWLDFDKF EVNGKQVAKC 720 KHCNKDFTGS SKSGTTHLKN HLERCQSKKI KNQERQLITS EIGDLITRDS DESNFTFDQE 780 RSRLDFAKMI IKHQCPLDMA EQEFFKIFVK NLQPMFEFQS KDILLSDIHR IYKEEKEKLQ 840 LYFDQLACNF NLTISLWKNN LGKTAYCCLI AHFIDDNWGP KMKIIACKPL EHIYDTKALN 900 EIIQSSVLEW NISKKVFSIT MDNPYLSDDM FQKIKETCFS DQGSFPSTHW FIGCTFIKDG 960 FREMDLILLK LRKSIEYVSE IAQGKLKFEV VNQVKLQGGK SWDDLSLRLD SDFGVLHSAL 1020 ESREIFCQLE KIDSNFKLNP SVDEWEMILA CHSCLKCFDD IEGTQSLTAN LYFPKLCNIY 1080 KKFLHLGKSN YPIVTLMKRK FGYYWSLCNL AFAVATILDP RLKFKFVEFS YTEIYGHDSK 1140 MHLNRFHKVL TDVYYEYANE ARNLSKSTSD LDDSNSSTTE IDNDCILESF SKFAPASNFN 1200 EVASWKSELD CYLDEPLLPL DGAFDILYWW RINTKRFPTL AKMARDFLAM PISILAPCLN 1260 FNAMITNPTY NNLNPESMEA LVCSQNWLEI PKENDGENHG PMQNIVV*

Sequence ? help Back to Top

Protein Sequence Length: 1308 aa Download sequence Send to blast

MASSSSFSSA DAALELLVSC AHAIEDGNLK TADSFLHQIW NLAPEEHGLI SKLVRYFAEA  60
LVRRAYGLHP SYYTYSNLQI PHPLYYYYYY SRFDINEMVG EAIESAAIGK KGFHLIDFHI  120
PHLYGRGYLF KTLPNRSSDP LSVRITVVLP TFLKNTVDFQ EEMEYLTGVG KPLKIELKRE  180
DLRIVYANSL GEVDESTLDL RRTNDDEALV VYYNFKFHTL LAEAEAMKKE LIKLRQINPE  240
IVIMQEQYAN DNDGNFIKRL EYSFRYYSNF FQYYSNLFKS GKPLDYNTAK YYMRQIHNIV  300
ACEGRDRIMR HQSLDEWRDL LLTAGFLQIP FQKDVENLHA LYWVEEIKEE KGCLVLSHKD  360
CLILFVSCWR PRAGEEHFKF NLNSNKLRQG FNPRPFQPFP EGFILNRLAT FAEIYDMLED  420
VCFRYELPVA FTWACEANTD KIMLDGKKYT LFMERTSCYA SNEGSQCFME ACAKHHIQEG  480
QAIAGKALQS SANFHFEPSI TKLIKSDYPL FNAAQLFGSH AVVAICLQNH YIIGDVYVVE  540
FYWPEIESEK SEFLALDIFN DLKNMKKKFV TIRVGSNEVG FEREAISTTL QGTMHTRNAQ  600
PASSTNDLLS SNTTWSLNAV QPCDVHEMER HGLVEQVESA PFSTPNPMSY GGVLQTQGPH  660
KQEIGEKDFI SQTVSIGDYE IVKAYMETCK VPRTKRRKYL SKVWLDFDKF EVNGKQVAKC  720
KHCNKDFTGS SKSGTTHLKN HLERCQSKKI KNQERQLITS EIGDLITRDS DESNFTFDQE  780
RSRLDFAKMI IKHQCPLDMA EQEFFKIFVK NLQPMFEFQS KDILLSDIHR IYKEEKEKLQ  840
LYFDQLACNF NLTISLWKNN LGKTAYCCLI AHFIDDNWGP KMKIIACKPL EHIYDTKALN  900
EIIQSSVLEW NISKKVFSIT MDNPYLSDDM FQKIKETCFS DQGSFPSTHW FIGCTFIKDG  960
FREMDLILLK LRKSIEYVSE IAQGKLKFEV VNQVKLQGGK SWDDLSLRLD SDFGVLHSAL  1020
ESREIFCQLE KIDSNFKLNP SVDEWEMILA CHSCLKCFDD IEGTQSLTAN LYFPKLCNIY  1080
KKFLHLGKSN YPIVTLMKRK FGYYWSLCNL AFAVATILDP RLKFKFVEFS YTEIYGHDSK  1140
MHLNRFHKVL TDVYYEYANE ARNLSKSTSD LDDSNSSTTE IDNDCILESF SKFAPASNFN  1200
EVASWKSELD CYLDEPLLPL DGAFDILYWW RINTKRFPTL AKMARDFLAM PISILAPCLN  1260
FNAMITNPTY NNLNPESMEA LVCSQNWLEI PKENDGENHG PMQNIVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-13	20	373	25	381	Protein SCARECROW
5b3h_D	8e-13	20	373	25	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481506.1	0.0	PREDICTED: uncharacterized protein LOC105796366 isoform X3
TrEMBL	A0A0D2R7L9	0.0	A0A0D2R7L9_GOSRA; Uncharacterized protein
STRING	Gorai.005G014600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-39	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G014600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]