PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G014800.1
Common NameB456_005G014800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 699aa    MW: 80547.9 Da    PI: 6.762
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G014800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.71.1e-28113583374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lLl+cAea+++gdl+ a+ +L  +  la ++  + qRl++yf+ AL +r ++        l+p  +s +  ++ +    +++ ++    +
  Gorai.005G014800.1  11 RLLLSCAEAIEDGDLKSADGFLHSILILAGESCYSDQRLVKYFADALVRRAYG--------LHPACSSFTFLVDPA---AYYHSIC---YL 87 
                         79***************************************************........333333311233332...3345555...45 PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQW.paLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvl 181
                          + +  + I +a+ g +r H iDf+i +   +  +  ++L + +++p  +R+  + +p  ++  + ++  e L++ A+e++v++e   +v+
  Gorai.005G014800.1  88 INGVIENVIHDALMGIRRFHLIDFSIPYYYSFgNSVVRTLPTFSGEPLPVRVSYILPPFLKKYVKFSRQMEFLTRDAKEVNVKLEdeLKVV 178
                         66777889*******************9999845899*****999999*********99999999999999*************6337788 PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                         + ++l++++  e+++k+   +E+++V   ++l++l+++  ++e      L  +k+++P++v++ +  ++h +++Fl+ f ++++y  + f+
  Gorai.005G014800.1 179 YGNSLAEVDECEIDLKRrrdDEMVVVYYKFKLEKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHAHSNFLTCFKDSFQYSLKTFE 265
                         999**********9999999****************99888888....8999*************************************** PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          + ++l      ++ ++ +  g+e    v  eg++ + rh tl +W++ +++aGF+ +pl++k  +   l ++    +   + ee+++l+l
  Gorai.005G014800.1 266 YYWEEL------DHYIDGK-YGWECNREVG-EGNNIIRRHPTLTEWQHLFSRAGFSRIPLNHKKDN---LSVEDER-WLEIMGEEEECLIL 344
                         **7775......5666666.5777666665.67777************************987654...3333333.323456999***** PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         g ++ p++++SaW+
  Gorai.005G014800.1 345 GNEGCPMFFLSAWK 358
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.5221342IPR005202Transcription factor GRAS
PfamPF035143.9E-2611358IPR005202Transcription factor GRAS
PROSITE profilePS508089.078626680IPR003656Zinc finger, BED-type
SMARTSM006148.3E-13626676IPR003656Zinc finger, BED-type
PfamPF028921.8E-5629669IPR003656Zinc finger, BED-type
SuperFamilySSF576678.93E-6629676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MASSFSDTVL RLLLSCAEAI EDGDLKSADG FLHSILILAG ESCYSDQRLV KYFADALVRR  60
AYGLHPACSS FTFLVDPAAY YHSICYLING VIENVIHDAL MGIRRFHLID FSIPYYYSFG  120
NSVVRTLPTF SGEPLPVRVS YILPPFLKKY VKFSRQMEFL TRDAKEVNVK LEDELKVVYG  180
NSLAEVDECE IDLKRRRDDE MVVVYYKFKL EKLVRDAKAM ERELVRLKEI NPTIVIMLDF  240
YSNHAHSNFL TCFKDSFQYS LKTFEYYWEE LDHYIDGKYG WECNREVGEG NNIIRRHPTL  300
TEWQHLFSRA GFSRIPLNHK KDNLSVEDER WLEIMGEEEE CLILGNEGCP MFFLSAWKPK  360
VEDGHFNSIS TNHKFGQGFD PNPAPLQPRQ PFLEGLKLNR LAALAEIHDI SKYLSCKYKL  420
SLTLTLASKV NNMNETISDP NKKHVFFIQD NYCYTNDMTS YYFMLDYSKD MISGRPLIIE  480
KAFESRDGYH FQPSLSKVED YRDSTLQRYN IDGAVAICLQ NRHTSDEVYI VEFYWPPTES  540
EISKSLALRI FDDLKHMKTT FVTVKVQVPE IKLQEAISSI PTSANTAMPL KIAENAHIEQ  600
VVADPFNTLE GPYNKIVETK RNKQRKSWSK VWVDFDKFEE HGKQVAKCKH CPKVFTGSSK  660
SGTTHLNNHS KVCPGKKKPN QESQLILPVD TNDRSSNV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837933e-42JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481508.10.0PREDICTED: uncharacterized protein LOC105796367 isoform X1
TrEMBLA0A0D2RDZ20.0A0A0D2RDZ2_GOSRA; Uncharacterized protein
STRINGGorai.005G014800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3620022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-28GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]