PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G020300.1
Common NameB456_005G020300, LOC105795578
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 256aa    MW: 29735.4 Da    PI: 5.6163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G020300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.71.1e-2731322128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           GfrF+Ptdee++ e L +kv+gk+ + ++++i + +iy++eP++L+ +  ++  +++e y++++r++ +      + ++ +g Wkat +
  Gorai.005G020300.1   3 LTGFRFSPTDEEVI-EILSQKVSGKTsMAAFDFIIQKNIYDFEPQELHgSesTIGLNKNERYYYCRRATDS------REVMGRGWWKATSH 86 
                         57************.88******9997778899**************84344555588899****997743......447889******** PP

                 NAM  89 dkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                          k+v s +ge++g k+ L+f+      +g+++ + ktdW+mhey l
  Gorai.005G020300.1  87 VKAVSSPNGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYCL 132
                         *********************88877779999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.0292147IPR003441NAC domain
SuperFamilySSF1019417.06E-303147IPR003441NAC domain
PfamPF023652.4E-154132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVLTGFRFSP TDEEVIEILS QKVSGKTSMA AFDFIIQKNI YDFEPQELHG SESTIGLNKN  60
ERYYYCRRAT DSREVMGRGW WKATSHVKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA  120
IKTDWIMHEY CLQSIHTEWR LCKIKYKGKE KVEEDMTPME KRHSNNKTLL TSFEAKDGSS  180
SSSNSIAPMQ LELAFEEPPL TQPILPVSND INYYYDSYCW SNSNMMLYED HQLADQLDTL  240
SEQPFSDLWS WDDYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-13515018171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5862412e-53JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480730.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0D2REB00.0A0A0D2REB0_GOSRA; Uncharacterized protein
STRINGGorai.005G020300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-20NAC domain containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]