PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G020600.1

Common Name

B456_005G020600, LOC105796423

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 258aa MW: 29845.3 Da PI: 5.1914

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G020600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.7	2.1e-27	3	132	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 GfrF+Ptdee++ e L +kv+g++ + ++++i + +iy++eP++L+ + ++ +++e y++++r++ + + ++ +g Wkat + Gorai.005G020600.1 3 LTGFRFSPTDEEVI-EILSQKVSGNTsMAAFDFIIQKNIYDFEPQELHgSesTIGLNKNERYYYCRRESDS------REVMGRGWWKATSH 86 57**********.88*99997778899**********84344555588899*98753......447889**** PP NAM 89 dkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 k+v s +ge++g k+ L+f+ +g+++ + ktdW+mhey l Gorai.005G020600.1 87 VKAVSSPNGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYGL 132 *****************88877779999999*******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.804	2	147	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-30	3	147	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	4	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MVLTGFRFSP TDEEVIEILS QKVSGNTSMA AFDFIIQKNI YDFEPQELHG SESTIGLNKN 60 ERYYYCRRES DSREVMGRGW WKATSHVKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA 120 IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPME KTFGHSNNKT LLTSFEAKDG 180 SSSSSNSIAP MQLELAFEQP PLTQPILPVN NDINYNYDSY CWSNSNMMLY EDHQLADQLD 240 TLSEQPFSDL WSWDDYH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-14	5	150	18	171	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586241	2e-53	JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481594.1	0.0	PREDICTED: putative NAC domain-containing protein 94
TrEMBL	A0A0D2S9P5	0.0	A0A0D2S9P5_GOSRA; Uncharacterized protein
STRING	Gorai.005G020600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-19	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.005G020600.1
Entrez Gene	105796423

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]