PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G033900.3
Common NameB456_005G033900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 234aa    MW: 25613.1 Da    PI: 7.4404
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G033900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.64.3e-111233355
             G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                        +++m+vkgLtl+h+kSHLQkYRl
  Gorai.005G033900.3  1 MRTMGVKGLTLYHLKSHLQKYRL 23
                        689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-10124IPR009057Homeodomain-like
PfamPF143791.9E-2667112IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRTMGVKGLT LYHLKSHLQK YRLGKQSAKE STDNSKDVSS IAERQDTGSS TTASSRMVAQ  60
DVNDGYQVTE ALRVQMEVQR KLHEQLEVQR RLQLRIEAQG KYLQSILEKA CTALNDEAAA  120
STGLEAAREE LSELAIKVSN DCQGMIPLDN IKLPSLSEFT AALENKTASN MPTRIGDCSI  180
ESFLTSSRSP LSQTGVGSQA VTMKRPRPPF GIGDPFPLGG IRQEIEWVMP NIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481754.11e-171PREDICTED: myb family transcription factor APL-like
SwissprotQ8LAJ78e-89PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A0D2R8J31e-172A0A0D2R8J3_GOSRA; Uncharacterized protein
STRINGGorai.005G033900.11e-169(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.14e-81G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]