PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G046700.1

Common Name

B456_005G046700, LOC105796696

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 235aa MW: 27327.5 Da PI: 10.1347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G046700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	83	131	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ +h ++Er RR++ +++++ L ++lP +K++K +i++ A+ +++L Gorai.005G046700.1 83 RCLKHTMNERTRREKQKKCYFALYSMLPLG-----TKNDKNSIVQTATMRVREL 131 6789*************************6.....6777777777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.08E-5	81	125	No hit	No description
SuperFamily	SSF47459	9.01E-11	81	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.144	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-6	83	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	86	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0067	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDELIKQLLG EHGTIWYETT PVLQPVRPSA FQPYPRTPRT EPWLEAAGCN NGVRSGNVNK 60 RMIEFLRKTN WVSVISKDKQ KQRCLKHTMN ERTRREKQKK CYFALYSMLP LGTKNDKNSI 120 VQTATMRVRE LEMEREELQR RNSELLVNLG GNANNEGAKI RARIDDPSYG IDYMLEVLKC 180 LKTLDSKPRM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRTR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481936.1	1e-174	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A0D2R9A1	1e-173	A0A0D2R9A1_GOSRA; Uncharacterized protein
STRING	Gorai.005G046700.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24448	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	5e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G046700.1
Entrez Gene	105796696

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]