PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G058700.1
Common NameB456_005G058700, LOC105796090
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 318aa    MW: 35281.8 Da    PI: 5.7642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G058700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-175098355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+ +++g
  Gorai.005G058700.1 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAAISIKG 98
                        56******.**********965...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-2849105No hitNo description
PROSITE profilePS5103220.40249106IPR001471AP2/ERF domain
SMARTSM003805.9E-3249112IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2050107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2750106IPR001471AP2/ERF domain
PRINTSPR003671.1E-75061IPR001471AP2/ERF domain
PfamPF008471.8E-105298IPR001471AP2/ERF domain
PRINTSPR003671.1E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSTSKTLENH FKYEPVVQTQ AGFALLRRNL SPPQPGERRG RRKQAEPGRF LGVRRRPWGR  60
YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAAISIKGAQ ARTNFVYSDN SCFHVLSPFD  120
QFLTSFQTQQ PKQAINHGVN SEPVPHQPDI SHSENTIPTP IIKPNNNDPS SSSLSSSSSS  180
YGSSVDDSAF FFSTDANSGY LASIVPRNCL NPPSSNPTSS HVSHQNQSHS GNNNYVLPTD  240
VTNTEFPYFG EGMDQESLWS SFDQQSWELS DIVNPPLMDE DGCMKAFHPY NDNPMMIPQA  300
SSMAPFGDIV DFGYSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1940105571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5244370.0HQ524437.1 Gossypium herbaceum clone NBRI_G002 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481174.10.0PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLA0A0D2SBJ90.0A0A0D2SBJ9_GOSRA; Uncharacterized protein
STRINGGorai.005G058700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-57ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]