PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G058900.1

Common Name

B456_005G058900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1178aa MW: 131201 Da PI: 9.0741

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G058900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.9e-11	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a ++ +R+ +++ Gorai.005G058900.1 47 QWTKEELERFYEAYRKYGKD-WKKVATMIR-NRSVEMV 82 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.626	43	96	IPR017884	SANT domain
SuperFamily	SSF46689	3.96E-11	44	91	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-6	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-9	47	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-5	47	81	IPR009057	Homeodomain-like
CDD	cd00167	1.25E-7	48	82	No hit	No description
SMART	SM01135	6.0E-56	636	737	IPR033471	DIRP domain
Pfam	PF06584	7.1E-33	636	736	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1178 aa Download sequence Send to blast
MAPSRKSKSV NKKFSYVNEV ASIKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD 120 SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR 180 PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG 240 SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA 300 KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCDFKGN 360 FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH 420 KEEKNEVEKT KLKGNHLVPG AKGCASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ 480 KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA 540 SSSTDQGRDL NNLAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGIK SSDNIVKGKI 600 SGPVTLFHDG ALDLKEKLCN FLCSYRARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG 660 HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD 720 LARPLSVGQR VIAVHPKIRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME 780 NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF 840 SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL 900 DKKHLQEAIV SELRRMNDEV LENQKGGDNH IKDSDSFKKQ YAAVLLQLNE VNEQVSSALL 960 CLRQRNTYQG TSSGKLLNPS GKIGEQGSQL SSFDAMHHVQ ESVSHVAEIV ESSRRKARSM 1020 VDAALKAMSS LRKGGKNIER IEDAIDFVNN QLSLNEFSAP APRSAAPVDS VRSHDNLTAC 1080 SSYPFATSHI PEMKLQNLSD QDELKIPSDL ISQCVATLLM IQKCTERQFP PGDVAEVLDS 1140 AVTSLKPCCS QNLPIYTEIQ KCMGIIRNQI LALVPTS*

Sequence ? help Back to Top

Protein Sequence Length: 1178 aa Download sequence Send to blast

MAPSRKSKSV NKKFSYVNEV ASIKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD  120
SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR  180
PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG  240
SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA  300
KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCDFKGN  360
FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH  420
KEEKNEVEKT KLKGNHLVPG AKGCASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ  480
KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA  540
SSSTDQGRDL NNLAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGIK SSDNIVKGKI  600
SGPVTLFHDG ALDLKEKLCN FLCSYRARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG  660
HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD  720
LARPLSVGQR VIAVHPKIRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME  780
NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF  840
SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL  900
DKKHLQEAIV SELRRMNDEV LENQKGGDNH IKDSDSFKKQ YAAVLLQLNE VNEQVSSALL  960
CLRQRNTYQG TSSGKLLNPS GKIGEQGSQL SSFDAMHHVQ ESVSHVAEIV ESSRRKARSM  1020
VDAALKAMSS LRKGGKNIER IEDAIDFVNN QLSLNEFSAP APRSAAPVDS VRSHDNLTAC  1080
SSYPFATSHI PEMKLQNLSD QDELKIPSDL ISQCVATLLM IQKCTERQFP PGDVAEVLDS  1140
AVTSLKPCCS QNLPIYTEIQ KCMGIIRNQI LALVPTS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	MRKRRQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482094.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0D2SBK3	0.0	A0A0D2SBK3_GOSRA; Uncharacterized protein
STRING	Gorai.005G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.005G058900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]