PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G078500.3

Common Name

B456_005G078500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 249aa MW: 26750.9 Da PI: 5.2185

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G078500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.7	8.9e-07	219	243	3	27
XXCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkae 27 + +r+rr++kNRe+A rsR+RK + Gorai.005G078500.3 219 AQQRQRRMIKNRESAARSRERKHTK 243 679*******************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.5E-6	215	243	No hit	No description
PROSITE pattern	PS00036	0	224	239	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MASSTSNSRN SDLSRRSTTS SSTKPLLLTD QKTNDDNENR LSSTMTVDGI LRNVYSVATS 60 TETTLVDASI TLIDAPIPNS VSDNPEVPQV QTVADCNNNV AKSVDEVWRE IVSGERKEIT 120 MKEEVPDEMM TLEDFLAKAG AVEEAAAVAS AEVKLHPDRL SGGVYTFDPV GGGAFQILDK 180 MEGSIVGLGN GMEVIGSGGG GGRGKRGRGV LMEPLDKAAQ QRQRRMIKNR ESAARSRERK 240 HTKLNWNP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1978	0.0	flower\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48802295	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF651785	0.0	EF651785.1 Gossypium hirsutum transcription factor TF3 (TF3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482412.1	1e-174	PREDICTED: G-box-binding factor 4 isoform X1
Swissprot	P42777	1e-35	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A0D2N978	0.0	A0A0D2N978_GOSRA; Uncharacterized protein
STRING	Gorai.005G078500.1	1e-173	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	9e-33	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G078500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]