PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G083700.4
Common NameB456_005G083700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 505aa    MW: 56014.7 Da    PI: 4.8537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G083700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS96.25e-301872913110
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L+ecA  +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf
  Gorai.005G083700.4 187 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 274
                         79*****************************************************************9...9******************* PP

                GRAS  94 shltaNqaIleavegee 110
                         ++++aN aI ea++g e
  Gorai.005G083700.4 275 GFMAANGAIIEAFKGLE 291
                         *************9865 PP
2GRAS251.92.4e-77289503157373
                GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                          le +g rL+k+Ae lgvpfef++ v +r++ + +++L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq+++
  Gorai.005G083700.4 289 GLEIVGLRLEKLAEILGVPFEFRA-VPSRTSLVAPSMLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVN 378
                         58899*******************.7***************************************************************** PP

                GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                         +n+++F+ rf+ea +yysa+fdsl+a+lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++
  Gorai.005G083700.4 379 TNTSPFFPRFIEAYSYYSAVFDSLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQ 469
                         ******************************************************************************************* PP

                GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          l++++ ++ y+++e+ g+l +gW+d++L+++SaW
  Gorai.005G083700.4 470 KLIKEYCDR-YKLKEDVGALHFGWEDKSLIVASAW 503
                         *******66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.08283485IPR005202Transcription factor GRAS
PfamPF035148.2E-75289503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSLVRSAEPA TASCRNTNLY SIQDSSDSTG MAIRMFGSDK HKPVYVMDSY SSESYEKYFL  60
DSPTDELIHS SSSGISGSSV RLQDVSSCQI RDYLEIQSPD TLDSDSDKMK LKLKELERAL  120
LADNDVDGDD DMFGTGLSME VDGEWSDPIR MGSHHDSPKE SSSSGTYLDS VSGNKEVSHV  180
SSQTPKQMLI ECAAILSEGH IEKASAIINE LRQKVSIQGD PPQRIAAYMV EGLAARMAAS  240
GKCLYKALRC KEPPSSDRLA AMQILFEVCP CFKFGFMAAN GAIIEAFKGL EIVGLRLEKL  300
AEILGVPFEF RAVPSRTSLV APSMLDCKPG EALIVNFAFL LHHMPDESVS TINQRDQLLR  360
MVKSMNPKLV TVVEQDVNTN TSPFFPRFIE AYSYYSAVFD SLDATLPRES QDRMNVERQC  420
LARDIVNIIA CEGEERIERY EVAGKWRARM IMAGFKSCPM SSNVIDTIQK LIKEYCDRYK  480
LKEDVGALHF GWEDKSLIVA SAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4419150425379Protein SCARECROW
5b3h_A1e-4419150424378Protein SCARECROW
5b3h_D1e-4419150424378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482485.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2PPV10.0A0A0D2PPV1_GOSRA; Uncharacterized protein
STRINGGorai.005G083700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]