PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G083700.5
Common NameB456_005G083700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 539aa    MW: 60048.3 Da    PI: 5.122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G083700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.82.1e-13118053713373
                GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                         s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN aI 
  Gorai.005G083700.5 180 SEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANGAII 267
                         678899***************************************************9...9***************************** PP

                GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                         ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+   +  le +g rL+k+Ae lgvpfef++ v +r++ + ++
  Gorai.005G083700.5 268 EAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-VPSRTSLVAPS 357
                         ************************************************99777889***********************.7********** PP

                GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                         +L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a+lpres++r+
  Gorai.005G083700.5 358 MLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDATLPRESQDRM 448
                         ******************************************************************************************* PP

                GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d++L+++SaW
  Gorai.005G083700.5 449 NVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWEDKSLIVASAW 537
                         **************************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.874142519IPR005202Transcription factor GRAS
PfamPF035147.1E-129180537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MHQQPFYNST VQRVGTMSLV RSAEPATASC RNTNLYSIQD SSDSTGMAIR MFGSDKHKPV  60
YVMDSYSSES YEKYFLDSPT DELIHSSSSG ISGSSVRLQD VSSCQIRDYL EIQSPDTLDS  120
DSDKMKLKLK ELERALLADN DVDGDDDMFG TGLSMEVDGE WSDPIRMGSH HDSPKESSSS  180
EGHIEKASAI INELRQKVSI QGDPPQRIAA YMVEGLAARM AASGKCLYKA LRCKEPPSSD  240
RLAAMQILFE VCPCFKFGFM AANGAIIEAF KGEKRVHIID FDISQGSQYI TLIQTIAKLP  300
GKPPHLRLTG VDDPESVQRL NGGLEIVGLR LEKLAEILGV PFEFRAVPSR TSLVAPSMLD  360
CKPGEALIVN FAFLLHHMPD ESVSTINQRD QLLRMVKSMN PKLVTVVEQD VNTNTSPFFP  420
RFIEAYSYYS AVFDSLDATL PRESQDRMNV ERQCLARDIV NIIACEGEER IERYEVAGKW  480
RARMIMAGFK SCPMSSNVID TIQKLIKEYC DRYKLKEDVG ALHFGWEDKS LIVASAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6418053831379Protein SCARECROW
5b3h_A2e-6418053830378Protein SCARECROW
5b3h_D2e-6418053830378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482485.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2RHL90.0A0A0D2RHL9_GOSRA; Uncharacterized protein
STRINGGorai.005G083700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]