PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G083700.6
Common NameB456_005G083700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 477aa    MW: 53189.1 Da    PI: 5.17
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G083700.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.11.9e-1351084753373
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L+ecA  +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf
  Gorai.005G083700.6 108 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 195
                         79*****************************************************************9...9******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         ++++aN aI ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+   +  le +g rL+k+Ae lgvpfef++ v
  Gorai.005G083700.6 196 GFMAANGAIIEAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-V 285
                         **********************************************************99777889***********************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          +r++ + +++L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a
  Gorai.005G083700.6 286 PSRTSLVAPSMLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDA 376
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         +lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d
  Gorai.005G083700.6 377 TLPRESQDRMNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWED 466
                         ************************************************************************66.**************** PP

                GRAS 365 rpLvsvSaW 373
                         ++L+++SaW
  Gorai.005G083700.6 467 KSLIVASAW 475
                         ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.42380457IPR005202Transcription factor GRAS
PfamPF035146.5E-133108475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MFLYCPIHFL LKDYLEIQSP DTLDSDSDKM KLKLKELERA LLADNDVDGD DDMFGTGLSM  60
EVDGEWSDPI RMGSHHDSPK ESSSSGTYLD SVSGNKEVSH VSSQTPKQML IECAAILSEG  120
HIEKASAIIN ELRQKVSIQG DPPQRIAAYM VEGLAARMAA SGKCLYKALR CKEPPSSDRL  180
AAMQILFEVC PCFKFGFMAA NGAIIEAFKG EKRVHIIDFD ISQGSQYITL IQTIAKLPGK  240
PPHLRLTGVD DPESVQRLNG GLEIVGLRLE KLAEILGVPF EFRAVPSRTS LVAPSMLDCK  300
PGEALIVNFA FLLHHMPDES VSTINQRDQL LRMVKSMNPK LVTVVEQDVN TNTSPFFPRF  360
IEAYSYYSAV FDSLDATLPR ESQDRMNVER QCLARDIVNI IACEGEERIE RYEVAGKWRA  420
RMIMAGFKSC PMSSNVIDTI QKLIKEYCDR YKLKEDVGAL HFGWEDKSLI VASAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6711247624378Protein SCARECROW
5b3h_D3e-6711247624378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482485.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2N9G60.0A0A0D2N9G6_GOSRA; Uncharacterized protein
STRINGGorai.005G083700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]