PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G088800.1

Common Name

B456_005G088800, LOC105797160

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 299aa MW: 33899.4 Da PI: 7.0063

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G088800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	4e-52	10	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+ Gorai.005G088800.1 10 LPAGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAELDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKP 99 799**********************999.88***********65556799********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + vg+kk Lvfy+g+apkgekt+W+mheyrl Gorai.005G088800.1 100 IGQ--PKPVGIKKALVFYSGKAPKGEKTNWIMHEYRL 134 98..789**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-62	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.909	10	160	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	11	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MTATELQLRL PAGFRFHPTD EELVMHYLCR KCASQSIAVP IIAELDLYKY DPWDLPDLAL 60 YGEKEWYFFS PRDRKYPNGS RPNRAAGSGY WKATGADKPI GQPKPVGIKK ALVFYSGKAP 120 KGEKTNWIMH EYRLADVDRS VRKKNSLRLD DWVLCRIYNK KGCIEKQPPR GSVTKKASVT 180 EIEESKPDNG TLGVEACEFP PAVTAVGNDY VYFDSSESVP RVHTDSSCSE HAVSREFMTE 240 VQSVPKWKEE LGMANNNALD FAYNYLDTNM DIGFASQMQT SNQLSPYQDI FMYLQKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-80	4	166	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3556	1e-156	flower\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48830173	1e-156

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU706341	0.0	EU706341.1 Gossypium hirsutum NAC domain protein NAC3 (NAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482550.1	0.0	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q39013	1e-144	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A0D2N9J6	0.0	A0A0D2N9J6_GOSRA; Uncharacterized protein
STRING	Gorai.005G088800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-146	NAC family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G088800.1
Entrez Gene	105797160

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]