PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G093500.1
Common NameB456_005G093500, LOC105797213
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 319aa    MW: 35822.8 Da    PI: 7.343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G093500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19133182255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ kl+g
  Gorai.005G093500.1 133 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDKAAYKLRG 182
                         59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-33132192No hitNo description
PROSITE profilePS5103223.38133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32133191IPR001471AP2/ERF domain
SMARTSM003804.2E-38133196IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22133191IPR016177DNA-binding domain
PfamPF008472.8E-13134182IPR001471AP2/ERF domain
PRINTSPR003676.7E-11134145IPR001471AP2/ERF domain
PRINTSPR003676.7E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTATMDFNSS GAFQSDFYGG ELMEALEPFM KSASSSSPSP SYNSLSSSQT QATFYPAFSG  60
LQEPQPGSTI DLNNLDQAQS NQIQAQFHFQ TYHPSYLYQN PQPSFSSNHM VRFISPKPVS  120
MKQMGSPPKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFETAEQAA LAYDKAAYKL  180
RGDSARLNFP NLRHQGSHIG EYKPLHSSVD AKLQAICESL EHDQKQGNKK KTSKEMKKDK  240
VQVATPEPEE KTVKLENSSS SSPVVSENEV SAESSPLSDL TFSNFNEHSW PEFGFSSENF  300
MLSKYPSYEI DWDSILKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22132190160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482619.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E43e-93RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0D2RBU20.0A0A0D2RBU2_GOSRA; Uncharacterized protein
STRINGGorai.005G093500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-69related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]