PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G094800.1
Common NameB456_005G094800, LOC105797228
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 373aa    MW: 41851.4 Da    PI: 6.5864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G094800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13174225155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.005G094800.1 174 QRMTHIAVERNRRKQMNQYLAALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 225
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-14172229No hitNo description
SuperFamilySSF474593.53E-17173243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13174239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-11174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MADAYDKRGS LFPSFQLLFH FPFTEISYFI ISLPFPRQQL GFGLLIMALE AVVYPQDPFP  60
YVFDDFSTVG GGVGFDFCLQ NEDKALLGIL QQANHHDLHA NWDSSSTNST MQHTKDQWDP  120
YSSPETCTVD QSLPGPIRFP PLMETPAPTT TTTNSRRKRR RTRSSKNKEE LENQRMTHIA  180
VERNRRKQMN QYLAALRSLM PPSYVQRGDQ ASIIGGAIDF VKELEQLLQS MEAHKRTTQQ  240
PQHDAYSSPF AEFFTFPQFS TRATQCNSNQ QQPMAAAAAT AESVADIEVT MVESHANLKI  300
LSKKQPRQLL KLVAGLQGLR LVVQHLNVTA MNEMALYSVS VKVEEGCHLS TVDEIAAAVN  360
QMLGRIQEET GF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160RKRRR
2156161RKRRRT
3174185RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482630.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-91BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2NA030.0A0A0D2NA03_GOSRA; Uncharacterized protein
STRINGGorai.005G094800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]