PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G098100.2
Common NameB456_005G098100, LOC105797275
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 263aa    MW: 30278.1 Da    PI: 8.7138
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G098100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091882232055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Gorai.005G098100.2 188 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 223
                         5679*****************************885 PP
2ELK37.16.7e-13143164122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK+qLlrKY+gyL+sLkqE+s
  Gorai.005G098100.2 143 ELKNQLLRKYRGYLSSLKQELS 164
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-18143IPR005540KNOX1
PfamPF037901.8E-21142IPR005540KNOX1
SMARTSM012566.6E-2051102IPR005541KNOX2
PfamPF037912.6E-195799IPR005541KNOX2
SMARTSM011887506080IPR005539ELK domain
PROSITE profilePS5121311.278143163IPR005539ELK domain
PfamPF037891.4E-9143164IPR005539ELK domain
SMARTSM011881.1E-6143164IPR005539ELK domain
PROSITE profilePS5007113.005163226IPR001356Homeobox domain
SuperFamilySSF466897.7E-20164239IPR009057Homeodomain-like
SMARTSM003896.2E-12165230IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27168229IPR009057Homeodomain-like
CDDcd000863.60E-11175227No hitNo description
PfamPF059208.5E-17183222IPR008422Homeobox KN domain
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKAKIIAHPH CSNLFEAYMD CQKVGAPPEV AARLAAARQE FEARRGSAVS STRDTIKDPE  60
LDQFMEAYYG MLVKYRDELM RPMQEALDFT RRTEAQLNRV SNGLVQIFNS DEKCDGVGSS  120
EEEENNNHSN GETRTDPRAE DRELKNQLLR KYRGYLSSLK QELSKKKKKG KLPKESRQKL  180
LTWWELHYKW PYPSETEKVA LAESTGLDQK QINNWFINQR KRHWKPSEDS QFMVMDGLHS  240
PNAVLYMDGH YMGGGPYRPG PS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482686.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotQ413301e-137KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A0D2RC370.0A0A0D2RC37_GOSRA; Uncharacterized protein
TrEMBLA0A0D2SDV30.0A0A0D2SDV3_GOSRA; Uncharacterized protein
STRINGGorai.005G098100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-99KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]