PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G098200.2
Common NameB456_005G098200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28659.4 Da    PI: 7.1554
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G098200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-16112164256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++t+eq  +Le+ F++++++s +  + LA++l+L  rqV vWFqNrRa+ k
  Gorai.005G098200.2 112 RKKLRLTREQSSILEDKFKQHSTLSPK--QALAEELNLRPRQVEVWFQNRRARTK 164
                         78889********************97..68**********************98 PP
2HD-ZIP_I/II1117.8e-36112198190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl++eq+++LE++F+++++L+p+  ++la+eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk++y++l+een+rL+keveeL+ +
  Gorai.005G098200.2 112 RKKLRLTREQSSILEDKFKQHSTLSPK--QALAEELNLRPRQVEVWFQNRRARTKLKQTEVNCELLKKCYETLTEENKRLQKEVEELK-S 198
                         69***********************95..69********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-15107167IPR009057Homeodomain-like
PROSITE profilePS5007114.366108166IPR001356Homeobox domain
SMARTSM003895.5E-14110170IPR001356Homeobox domain
CDDcd000861.02E-14111167No hitNo description
PfamPF000464.9E-14112164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-15112164IPR009057Homeodomain-like
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
SMARTSM003401.8E-20166209IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-8166199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGFDDICNTA LGLGLGCLVK QENISQLDHH QQKKKQLFLK HDHFSPSLLS LAPSYDTCAI  60
FDAHQQQASS LSAASSFSNS SVKRERDLGG EEVELERICS RVSDEDDEGS PRKKLRLTRE  120
QSSILEDKFK QHSTLSPKQA LAEELNLRPR QVEVWFQNRR ARTKLKQTEV NCELLKKCYE  180
TLTEENKRLQ KEVEELKSLK VTAPCYMQVG AATLTMCPSC ERVDNVGENP STTLFTLGQK  240
SHFITPFTHP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5269240.0HQ526924.1 Gossypium herbaceum clone NBRI_B2_832 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482687.11e-174PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-74HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2RID50.0A0A0D2RID5_GOSRA; Uncharacterized protein
STRINGGorai.005G098200.11e-173(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-72HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]