PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G098700.2
Common NameB456_005G098700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 564aa    MW: 61663.3 Da    PI: 7.9695
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G098700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24209253145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gorai.005G098700.2 209 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 253
                         79****************************************985 PP
2QLQ59.78.1e-21138174137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT +Q+++L++Q+l+yKy+ an+P+P+ Ll +i+k
  Gorai.005G098700.2 138 GPFTSSQWMELEHQALIYKYMTANVPIPSTLLIPIKK 174
                         59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.4E-12138174IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-14139172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.862139174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663209253IPR014977WRC domain
PfamPF088796.6E-21210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MRFFYQWDAN NLLSYILRKE SETKQKLYGS AFLKQERSGS SEDDWRTSKL AKFDDISASK  60
AVLSQHRNTL FRSNTSIFFD GQQQQQMLSF SAPKSEALSM GRSSQNVIFP YFHLTSPACT  120
RNTGYNTGGF NGANMNGGPF TSSQWMELEH QALIYKYMTA NVPIPSTLLI PIKKALDSAG  180
FSSFSGGLLR PNTSVGWGAF HLGFSNNTDP EPGRCRRTDG KKWRCSRDAV ADQKYCERHM  240
NRGRHRSRKP VEGQSGCSTA STTTTTTKLM HSVSSSSASV VGPNGGNGES NSLTIAQQQF  300
KNLQPAGESN LSHSGPLNRW LLNKESIGER MHDTAHGNEF GVVSSESLLN PSHKSSSLVK  360
CINFDCSQDL DSQETESHRS VRQFFDAWPK TQSDCSSIFL PEADVQSDRT QLSISMPMAL  420
SDFMSSTSSP NNEDVTHSPL QLTRELDPIQ MGLEVGSVGN ETNWRQANWI PISRETSVGG  480
PLGEVLHSTN SSSAECKNSS AVNLMTEKCD HSPRLGSSPT GVLQKTMFGS HSNSSAGSSP  540
RAENNKNDLL GSTIVHSSSL PAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422966e-58KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482695.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A0D2NA780.0A0A0D2NA78_GOSRA; Uncharacterized protein
STRINGGorai.005G098700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-91growth-regulating factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]