PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G101400.1

Common Name

B456_005G101400, LOC105796129

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 201aa MW: 22964.9 Da PI: 9.7911

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G101400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.5e-21	74	133	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le +++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Gorai.005G101400.1 74 TRWSPTQEQIGILEMMYRGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 133 7***************99************************************97 PP
2	Wus_type_Homeobox	116.6	1.2e-37	74	135	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe++y+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq Gorai.005G101400.1 74 TRWSPTQEQIGILEMMYRGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 135 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-13	68	141	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.042	69	134	IPR001356	Homeobox domain
SMART	SM00389	2.8E-7	71	138	IPR001356	Homeobox domain
CDD	cd00086	7.51E-5	74	135	No hit	No description
Pfam	PF00046	1.5E-18	74	133	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	75	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGNMKVHELS RGLWEHEPSL SLACNPLRTH NSNTLSSFHL KTFITPKPTP TKLASSYQQP 60 HSPQVDMQAG AGGTRWSPTQ EQIGILEMMY RGGMRTPNAQ QIEQITVQLG KYGKIEGKNV 120 FYWFQNHKAR ERQKQKRNSL VLNSPPITTI TLNTREDGPY KRKCRSWSFE YIEEESGSSS 180 SFKEEETRTL ELFPLHPEGR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481195.1	1e-149	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	2e-60	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A0D2RCA6	1e-147	A0A0D2RCA6_GOSRA; Uncharacterized protein
STRING	Gorai.005G101400.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	7e-52	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Gorai.005G101400.1
Entrez Gene	105796129

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]