PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G102000.1
Common NameB456_005G102000, LOC105797321
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 339aa    MW: 38140.2 Da    PI: 8.471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G102000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.9e-35251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF ++ Fkkg+k+
  Gorai.005G102000.1  25 FLTKTYQLVDDPTTDKIVSWGEDDTTFVVWGPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFGNEFFKKGEKQ 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.005G102000.1 107 LLCEIHRRKTS 117
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3617109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.16E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.5E-4179207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALVLDNCEE ILLSLDSHKS VPAPFLTKTY QLVDDPTTDK IVSWGEDDTT FVVWGPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFGNEFF KKGEKQLLCE IHRRKTSQPQ  120
VAINHHYHSH SPLVNAPSFF PFPSRVSISP AASDEKANWC DSPRVGTGVS VFGGYNSSVT  180
ALSEDNEKLR RRNNLLTSEL AHMRKLYNDI IYFVQNHVKH VTPSNPYPPN MLLCGSQSAA  240
NSSLLQKHLN QLLGYYPNST KPAQVQFLNT PTAASKSSLT ILEETSRNSC KTKLFGVPLH  300
SKKRLHPECG ATNSETNKVR LVFENEDLGL NLMPPSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486170.0KJ748617.1 Gossypium hirsutum HSF14 (HSF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482744.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D2RIL00.0A0A0D2RIL0_GOSRA; Uncharacterized protein
STRINGGorai.005G102000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]