PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G110600.1
Common NameB456_005G110600, LOC105793811
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 205aa    MW: 23302.7 Da    PI: 6.7582
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G110600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702105.68.4e-3380140262
              DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 
                         r+g+++CqdCGnqakkdCah RCRtCCks+gf+C+thvkstWvpaa+rre+q q+ +++++
  Gorai.005G110600.1  80 RQGGINCQDCGNQAKKDCAHLRCRTCCKSHGFQCQTHVKSTWVPAARRREKQPQNPQQQQQ 140
                         7899***********************************************9888776654 PP
2DUF70284.72.2e-2614520397154
              DUF702  97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                         ++ le +++P+ev+s+avfrcv+v+++d+ +e++laYqtav+igGhvfkGiLydqG+e+
  Gorai.005G110600.1 145 NQGLELAQFPSEVNSPAVFRCVKVNAMDEvDEDQLAYQTAVNIGGHVFKGILYDQGPEN 203
                         56788999*********************88899***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-2983141IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-2685127IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.7E-22151202IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.9E-26152201IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAGFFYLGGR QDEDKEENLN LYRNEEICNK GFEIWPHYNY YQQQQNVNNQ SFGAGPSRRT  60
SGLNLSDEWS SRSVGFTDMR QGGINCQDCG NQAKKDCAHL RCRTCCKSHG FQCQTHVKST  120
WVPAARRREK QPQNPQQQQQ FRGENQGLEL AQFPSEVNSP AVFRCVKVNA MDEVDEDQLA  180
YQTAVNIGGH VFKGILYDQG PENH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160531e-132JX616053.1 Gossypium hirsutum clone NBRI_GE60429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478110.11e-153PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1
RefseqXP_016693480.11e-153PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ57e-62SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D2RJ511e-152A0A0D2RJ51_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JTA61e-152A0A1U8JTA6_GOSHI; protein SHI RELATED SEQUENCE 5-like
STRINGGorai.005G110600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2851833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-40Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]