PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G122500.1

Common Name

B456_005G122500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 855aa MW: 95149.9 Da PI: 7.7524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G122500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	166	187	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G+ C+F H Gorai.005G122500.1 166 TQICKKFMA-GRCRRGSLCHFLH 187 789****.*********** PP
2	zf-CCCH	20.1	1.1e-06	292	312	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+ G C+ G+ C+F+H+ Gorai.005G122500.1 292 PCKYFST-GNCHNGNYCRFSHP 312 7****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-4	163	189	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.779	163	190	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.2E-7	166	188	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-5	166	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.746	223	250	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.023	223	249	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	287	314	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0019	287	313	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	292	317	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MLRTIVEMSK SRKRSSKWDL KEEHQYSLEN VQDSAWFANA CDRESEHGSF SPEFGRNGNK 60 WSAIKSKHGL PSKEYLHGSK CGENNSDCAT NWKTTTPCDG DETYSMKKSP TLNDRRQQNC 120 HHSLKSDWSR SRSRSRSRSR SRSPIDGIGR QPGFLEMTRN GSGVSTQICK KFMAGRCRRG 180 SLCHFLHQDI QSHEDGSDNR QKRASVSKYI TCNEDKYYLI ESGRSTDCCT DYRKGNCRRG 240 ASCRSAHDGV SDGFSKGSIN EISRERENNK RNKLTSPEQD VEREARKSSS IPCKYFSTGN 300 CHNGNYCRFS HPASTECDRG QWGRSSVSSD MLLDGAELTD IDASFNVDKY GNASNGSDAD 360 VSNESEIPWT GPKWSAADAS IDLHNSRASS KQSDISVYLG ASKLNKDTNE FSSCNIDERW 420 QHGYDACGKN SESNVHCKRI DIDKEDLKKI ENVGVNTGVS EPKGAEESIV AMEMSPMWNC 480 RLHSSVDKEK SHSSEPTPVG TSLRAHGKNI IEKASGHAHD EHAASQLMSI EESNFHLDHM 540 TRGSSCAVLR SFDHPGPSSS SLPYSNLNTV RQSELSFPSN EVNVKVPQNN LLLQEEKPSN 600 KLNIGDTNIL HGNYGFPSTQ NMVTFANSRG PVESGQEIIF PEQYNPRSDS IDPAKKQDTN 660 TEPLGFSVHP VSQESTADGK LELSAKNFLP SSLVGGRNGS DYHNDHSSKR DSDFDSHKPN 720 QLEPIASFEL TKENGGIVQT KKAEAENKNG LSENTDADDR TEEGKKSKDV KGVRAFKFAL 780 VEFVKDLLKP TWKEGQIGKE AYKSIVRKVV DKVTATMQGT NIPRTPEKID QYLSFSKPKL 840 SKLVHAYVEK FQKS*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MLRTIVEMSK SRKRSSKWDL KEEHQYSLEN VQDSAWFANA CDRESEHGSF SPEFGRNGNK  60
WSAIKSKHGL PSKEYLHGSK CGENNSDCAT NWKTTTPCDG DETYSMKKSP TLNDRRQQNC  120
HHSLKSDWSR SRSRSRSRSR SRSPIDGIGR QPGFLEMTRN GSGVSTQICK KFMAGRCRRG  180
SLCHFLHQDI QSHEDGSDNR QKRASVSKYI TCNEDKYYLI ESGRSTDCCT DYRKGNCRRG  240
ASCRSAHDGV SDGFSKGSIN EISRERENNK RNKLTSPEQD VEREARKSSS IPCKYFSTGN  300
CHNGNYCRFS HPASTECDRG QWGRSSVSSD MLLDGAELTD IDASFNVDKY GNASNGSDAD  360
VSNESEIPWT GPKWSAADAS IDLHNSRASS KQSDISVYLG ASKLNKDTNE FSSCNIDERW  420
QHGYDACGKN SESNVHCKRI DIDKEDLKKI ENVGVNTGVS EPKGAEESIV AMEMSPMWNC  480
RLHSSVDKEK SHSSEPTPVG TSLRAHGKNI IEKASGHAHD EHAASQLMSI EESNFHLDHM  540
TRGSSCAVLR SFDHPGPSSS SLPYSNLNTV RQSELSFPSN EVNVKVPQNN LLLQEEKPSN  600
KLNIGDTNIL HGNYGFPSTQ NMVTFANSRG PVESGQEIIF PEQYNPRSDS IDPAKKQDTN  660
TEPLGFSVHP VSQESTADGK LELSAKNFLP SSLVGGRNGS DYHNDHSSKR DSDFDSHKPN  720
QLEPIASFEL TKENGGIVQT KKAEAENKNG LSENTDADDR TEEGKKSKDV KGVRAFKFAL  780
VEFVKDLLKP TWKEGQIGKE AYKSIVRKVV DKVTATMQGT NIPRTPEKID QYLSFSKPKL  840
SKLVHAYVEK FQKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	RSRSRSRSRSR
2	133	141	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478323.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBL	A0A0D2RDI3	0.0	A0A0D2RDI3_GOSRA; Uncharacterized protein
STRING	Gorai.005G122500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-17	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G122500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]