PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G126700.1

Common Name

B456_005G126700, LOC105794002

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 247aa MW: 28172.8 Da PI: 7.6649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G126700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.5	5.4e-29	82	169	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+lap Gorai.005G126700.1 82 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLAP 169 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-26	82	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEFGVHGDVN GGMVLNSVQA EASSMENENE TGENPVEETF QKELNEKVEQ ISPGRDDIPE 60 GIPADEPYVG QEFESEAAAH AFYNAYATRV GFIIRVSKLS RSRRDGSAIG RALVCNKEGF 120 RMPDKREKIV RQRAETRVGC RAMILVRKVS SGKWVVTKFV KEHTHPLAPG KGRRDCIYDQ 180 YPNEHNKIRE LTQQLAIEKK RAATYKRHLE LIFEQIEEHN ESLSKKIQHI VDRVREIESK 240 EQQNRV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478406.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2
Refseq	XP_016693429.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBL	A0A0D2SFJ5	0.0	A0A0D2SFJ5_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JYQ1	0.0	A0A1U8JYQ1_GOSHI; protein FAR1-RELATED SEQUENCE 12-like isoform X1
STRING	Gorai.005G126700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-101	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G126700.1
Entrez Gene	105794002

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]