PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G128700.1
Common NameB456_005G128700, LOC105794033
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 212aa    MW: 24394 Da    PI: 8.5846
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G128700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.7e-2746134290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++t++++eHnH+l+
  Gorai.005G128700.1  46 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFNKSGKWVITRFVKEHNHPLV 134
                         9**************************************99999998****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2446134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDLDEGAEAI ESFTGGEILA FPCEADSIVE PHEGMEFESE DAAKIFYDEY ARRVGFVMRV  60
MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI HIKFNKSGKW  120
VITRFVKEHN HPLVVAPREA RQTMDEKDKK IQELTVELRN KKRLCAAYQE QLTAFMKIVE  180
EHSNQLSKKV QNVVNNLKEY ESIEPQLLQQ R*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478448.11e-157PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_012478449.11e-157PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL85e-25FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D2RKG01e-156A0A0D2RKG0_GOSRA; Uncharacterized protein
STRINGGorai.005G128700.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-115FAR1 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]