PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G133400.1

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 188aa MW: 20937.4 Da PI: 6.9302

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G133400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.9	3.5e-12	50	73	26	49
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRki 49 gvc++vLK+iCR++G++RWPh k+ Gorai.005G133400.1 50 GVCTSVLKKICRENGLDRWPHSKL 73 8********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	6.9E-10	50	74	IPR003035	RWP-RK domain
Pfam	PF08590	8.0E-7	91	134	IPR013899	Domain of unknown function DUF1771

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MLLHPDSVPH LLRMLAVIAI LIFNHGLGIP PNSLPSFPFS ALILSDISQG VCTSVLKKIC 60 RENGLDRWPH SKLDAGLAAA ILMQNLNRIS MAATAYSKGE LEYAAYLFDQ EKIQTKLARE 120 ANERASQNIF KARNSVWYGA SFLLQVTYLF DKMEECLGIV LLEALQNGTA VLDLKKLENL 180 FYYIFDT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459805.1	1e-56	PREDICTED: uncharacterized protein LOC105780177 isoform X1
Refseq	XP_012459806.1	1e-56	PREDICTED: uncharacterized protein LOC105780177 isoform X1
TrEMBL	A0A2P5SRL1	2e-87	A0A2P5SRL1_GOSBA; Uncharacterized protein
STRING	Gorai.005G133400.1	1e-136	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36243	2	2

Link Out ? help Back to Top
Phytozome	Gorai.005G133400.1