PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G137100.8
Common NameB456_005G137100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 512aa    MW: 58317.8 Da    PI: 7.7298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G137100.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012303324223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         kCp+CgksF ++  L +H++  +
  Gorai.005G137100.8 303 KCPYCGKSF-HQKKLSVHLKYyC 324
                         7********.********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.01E-41122292IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004873.2E-28158478IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3003.4E-30158290IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119215.162175460IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF001761.2E-47177463IPR000330SNF2-related, N-terminal domain
CDDcd000463.15E-7182289No hitNo description
SuperFamilySSF525402.01E-41397463IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.4E-30398462IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MQLRSRKRTS NFSANEEHSD SSDQADNFIQ LDDLSDSETY VPSSDSDLGE EEILDLNHKA  60
VKPAPITISD FTEPPTNRGN GEQILSEQNE SQFDFNVSTA KKRNNTKRKK KARSGQPLMW  120
EVWEQEHEKW IDENLTVDVD LDQQNAVITE TSDASSDLII PLLRYQKEWL AWALKQEDSN  180
TKGGILADEM GMGKTIQAIA LVLAKRQVLH TIGEPNVSSQ TAGSSTDLPR IRCTLVICPV  240
VAVSQWVSEI DRFTSRGSTK VLVYHGANRG KNVKQFSEYD FVITTYSIVE AEYRKFMMPP  300
KEKCPYCGKS FHQKKLSVHL KYYCGPDAIK TENQSKQERK KPKSMFKSGK KHASNYEADS  360
RKRGSKKKAK HNREDKDRDF EFDETSAGKE HNLPEGKSLL HSVKWERIIL DEAHFVKDRR  420
CNTAKAVLSL ESLYKWALSG TPLQNRVGEL YSLVRFLQIV PYSYYLCKDC DCRTLDYRYG  480
LILNSERILA LLDPDLISLQ VTTCSQFPFG P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478612.10.0PREDICTED: DNA repair protein RAD16 isoform X1
TrEMBLA0A0D2PSQ00.0A0A0D2PSQ0_GOSRA; Uncharacterized protein
STRINGGorai.005G137100.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]