PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G141400.1

Common Name

B456_005G141400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 263aa MW: 29140.3 Da PI: 8.1735

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G141400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.7	2.9e-33	8	63	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 + YkeClkNhAaslGgha+DGCgEfmp+++++ +++a++kCaACgCHRnFHRr++ Gorai.005G141400.1 8 VLSYKECLKNHAASLGGHALDGCGEFMPTPSATpTDPASFKCAACGCHRNFHRRDP 63 578***************************99******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.5E-28	10	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.5E-30	11	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.997	11	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-17	11	65	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.67E-19	137	208	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-29	138	209	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.0E-27	147	204	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MKQEEEMVLS YKECLKNHAA SLGGHALDGC GEFMPTPSAT PTDPASFKCA ACGCHRNFHR 60 RDPYDGPAFI HRLPPPPNRS SSPSPTHSPG PSRTPPSPVP FSYYSSAPNM LLALSTAYSG 120 PMDEYHYHLS NSNPSVSRIN NNNPSGRKRS RTKFTKEQKE KMHAFAERLG WRMPKGEEKL 180 IQEFCNEVGV NRGVLKVWMH NNKNTFSKKE ILSVGNLNLH DSHDNNNNIE DNGNALDSNS 240 HMHNNEDSIQ LHISTNNGSS TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-22	148	205	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:17233795}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269\|PubMed:17233795}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478695.1	0.0	PREDICTED: zinc-finger homeodomain protein 11-like
Swissprot	Q9SEZ1	2e-75	ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBL	A0A0D2REY2	0.0	A0A0D2REY2_GOSRA; Uncharacterized protein
STRING	Gorai.005G141400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5166	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	1e-55	zinc finger homeodomain 1

Link Out ? help Back to Top
Phytozome	Gorai.005G141400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]