PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G146800.1

Common Name

B456_005G146800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 202aa MW: 22331.3 Da PI: 8.2848

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G146800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	34.1	7.2e-11	143	187	1	55
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 +Cqv+gC++d+ + k+yh+rhkv +v+g+eqrfCqqCs +s f Gorai.005G146800.1 143 CCQVHGCNKDIRSSKDYHKRHKV----------AVNGIEQRFCQQCSSLIFFSSF 187 6******************97..........689*********88776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-10	138	181	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	12.426	141	201	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.85E-15	142	187	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-7	144	187	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDLAVDASGS RKALLGRDIK PFTDSEAVES MEFMDFGFSH MNKKPFYGNT SLGFGAESAK 60 KLVSPTCMFT SSSYYGEEES GSKQSSSLME FNSQGSSLID LKLGRLTDYR DAQHGRHLKE 120 TFVVSSVCSA MTAKKARTTS SPCCQVHGCN KDIRSSKDYH KRHKVAVNGI EQRFCQQCSS 180 LIFFSSFTLF FPSIWSELVI V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478794.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_012478795.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBL	A0A0D2PT95	1e-147	A0A0D2PT95_GOSRA; Uncharacterized protein
STRING	Gorai.005G146800.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36247	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-15	SBP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G146800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]