PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G188700.1
Common NameB456_005G188700, LOC105794720
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 249aa    MW: 27518.8 Da    PI: 7.1473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G188700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-11133180455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Gorai.005G188700.1 133 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 180
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-18127198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-10127184No hitNo description
Gene3DG3DSA:4.10.280.103.3E-18129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPPAMMSDG GYNLAEIWQY PVNESGLRRG QFGNVPPPHY DHPNPEVSGG VRRRRDGEDE  60
AAKVVSTSSG NGVSFGDGKR LKASGCREEN DDSKVEAAEP SSGKPVEQKA KPPEPPKQDY  120
IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD EIINYIQSLQ  180
RQVEFLSMKL EAVNSRMNPT IEVFPLKDYG QQTFDATGMA FGPQATREYS RGASPEWLHI  240
HGGFERTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.13100.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488115480.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2835062e-68AF283506.2 Catharanthus roseus MYC1 (myc1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479476.10.0PREDICTED: transcription factor BPE
SwissprotQ69WS37e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0D2RHW30.0A0A0D2RHW3_GOSRA; Uncharacterized protein
STRINGGorai.005G188700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-88BIG PETAL P
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]