PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G193700.1

Common Name

B456_005G193700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 310aa MW: 34156.1 Da PI: 7.074

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G193700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.4	6.4e-15	219	243	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaH+ Gorai.005G193700.1 219 KTELCNKWQETGACPYGDHCQFAHS 243 9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.7E-18	212	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-11	214	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-8	217	244	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.535	217	245	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-12	219	243	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-11	251	284	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-8	251	285	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	255	282	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.605	255	283	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MQNDNVSTAY GDLAAGKLNH HQNGGVYSSS TANSSASLLA LHHPRLLMQQ HQDMINRHSL 60 CLSRFREAAK EAESLRQENT SLRSVNSDLN KQLNALFQAS VQDHFASSDY NTTPFDLENA 120 LEGLCFGGGG GVGEGEVSDM EGEVDVERVK LPKSISIRSN GYQKMMSKAG AASHRGKTRG 180 LARTSNASQQ ISRAKVYVQG GKEEEELLEL EVYNQGMLKT ELCNKWQETG ACPYGDHCQF 240 AHSVEELRPV IRHPRYKTEV CRMVLTGDVC SYGHRCHFRH ALTEQEKSIG HLKPQTSMST 300 CGHGDVWCA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	8e-20	219	284	5	70	Butyrate response factor 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479542.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X3
Swissprot	Q9C9F5	1e-81	C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A0D2SK15	0.0	A0A0D2SK15_GOSRA; Uncharacterized protein
STRING	Gorai.005G193700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7287	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	5e-79	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G193700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]