PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G195300.1
Common NameB456_005G195300, LOC105794800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 256aa    MW: 29069.1 Da    PI: 9.7712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G195300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51151391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+
  Gorai.005G195300.1  15 LPPGFRFHPTDEELVVQYLRRKVLSWPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQ 101
                         79****************************.89***************54...46799********************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s  ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Gorai.005G195300.1 102 IVSCsGNQVVGMKKTLVFYRGKPPQGTRTDWIMHEYRL 139
                         *99757888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6011172IPR003441NAC domain
PROSITE profilePS5100557.49615172IPR003441NAC domain
PfamPF023651.0E-2616139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMEKLNFVKN GVLRLPPGFR FHPTDEELVV QYLRRKVLSW PLPASIIPEV DVCKADPWDL  60
PGDLEQERYF FSTREAKYPN GNRSNRATLS GYWKATGIDK QIVSCSGNQV VGMKKTLVFY  120
RGKPPQGTRT DWIMHEYRLV TADTCNAPHK KNQTQNHLVA VENWVLCRIF LKKRSGATKR  180
EDDGLQCCNK KGVGKARRKS PVFYEFLSKE RTDLKLAPAS SSSCSSGITQ VSNDNADDHE  240
ESSSCNSFPY FRRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-531317915171NO APICAL MERISTEM PROTEIN
1ut4_B4e-531317915171NO APICAL MERISTEM PROTEIN
1ut7_A4e-531317915171NO APICAL MERISTEM PROTEIN
1ut7_B4e-531317915171NO APICAL MERISTEM PROTEIN
3swm_A5e-531317918174NAC domain-containing protein 19
3swm_B5e-531317918174NAC domain-containing protein 19
3swm_C5e-531317918174NAC domain-containing protein 19
3swm_D5e-531317918174NAC domain-containing protein 19
3swp_A5e-531317918174NAC domain-containing protein 19
3swp_B5e-531317918174NAC domain-containing protein 19
3swp_C5e-531317918174NAC domain-containing protein 19
3swp_D5e-531317918174NAC domain-containing protein 19
4dul_A4e-531317915171NAC domain-containing protein 19
4dul_B4e-531317915171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.28640.0flower|seedling| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106420.0KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479573.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ9FY933e-98NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D2RIC00.0A0A0D2RIC0_GOSRA; Uncharacterized protein
STRINGGorai.005G195300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]